RNA id: XM_039778720.1


Basic Information

Item Value
RNA id XM_039778720.1
length 7206
RNA type mRNA
GC content 0.53
exon number 43
gene id prpf8
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29491164 ~ 29508379 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCGTTCATCGTGTGGCCGCCGTCGTGCGTGATGCAGTTTTATGAAGACAAATCAACACAACAGTGAAACGGAAAAAGGACAATACAACTTTGAAAGAGAAATGTTGTGGTAGCAGCTTGTTTGTGGAACACGGCGGTCTTCAACGTTAAGAACTTACACGGGGAGTAAAGGTAGCGAGGGAGGCGCCATGGCAGCTACCTTCCCCTACAGAGGGGTCCCTGCAGGGATGCCACCAGGTGTACCCCCTCCTGTGCCCGTCCCAGACTACATGTCTGAGGAAAAACTGCAAGAGAAAGCAAGAAAATGGCAGCACTTACAGGCAAAGCGCTACTCAGAAAAGAGAAAGTTTGGCTTTGTGGATGCTCAGAAGGAAGACATGCCACCTGAACATGTACGCAAGATCATCAGGGACCATGGAGACATGACCAATAGAAAGTTTCGCCATGACAAGAGGGTGTACCTTGGTGCCCTCAAGTACATGCCCCATGCAGTACTGAAGCTGCTTGAAAACATGCCTATGCCCTGGGAACAGATCAGAGACGTGCCCGTCCTCTACCACATCACCGGAGCTATTTCCTTTGTGAATGAAATCCCCTGGGTCATAGAGCCGGTCTACATTGCTCAGTGGGGCACCATGTGGATTATGATGCGGCGTGAGAAGCGTGATCGTCGGCACTTCAAGCGGATGCGTTTTCCACCATTTGATGATGAGGAGCCGCCACTGGACTACGCTGACAACATCCTTGATGTGGAACCACTGGAGGCCATCCAGATGGAgctggactctgaggaggacTCTTCAGTTGCAGAGTGGTTATATGAGCACCAACCCCTCAAAGACTCTGCCAAGTTTGTGAACGGCACCACCTACCGTCGCTGGCAGTTCACACTGCCCATGATGTCCACACTGTACCGCCTGGCCAATCAGCTGCTCACTGACCTGGTGGATTTCAATTACTTTTATCTGTTTGACCTCAAGGCCTTCTTTACGTCAAAGGCCTTGAATATGGCCATCCCTGGAGGACCGAAGTTTGAGCCACTGGTCAGGGACATCAACCTCCAGGATGAAGACTGGAATGAGTTCAATGACATCAACAAGATCATCATCCGACAGCCTATCAGGACAGAGTACAAAATCGCCTTCCCCTACCTGTACAACAACTTGCCACACCACGTCCACCTAACCTGGTATCATACACCCAACGTGGTGTTTATCAAGACCGAGGATCCAGATCTCCCAGCGTTCTACTTTGACCCGCTGATCAACCCAATTTCACACAGACATTCTGTCAAGAGTCAGGAGCCTCTGCCTGATGACGATGAGGAGTTTGAGCTTCCTGAATATGTGGAGCCCTTCCTCAAGGACACCCCACTCTACACAGACAACACAGCTAATGGCATTGCTCTGCTGTGGGCACCCAGACCCTTCAACCTCAGATCTGGCCGCACAAGGCGTGCCATTGATATCCCCCTGATCAAGAACTGGTACCGTGAGCACTGCCCTGCAGGACAGCCAGTGAAAGTGCGTGTGTCATACCAGAAATTGCTCAAGTACTATGTGCTTAATGCTCTCAAACACAGACCACCCAAGGCCCAGAAGAAGAGGTATTTGTTCCGCTCCTTCAAGGCCACAAAGTTCTTTCAGTCCACCAAGCTGGACTGGGTTGAGGTTGGTCTGCAGGTTTGCCGACAGGGCTACAACATGCTCAATCTGCTTATCCACCGTAAGAACCTCAACTACCTGCATCTCGACTACAACTTCAACCTGAAGCCTGTCAAGACACTGACTACAAAGGAAAGAAAGAAGTCCCGATTCGGTAATGCCTTTCACTTGTGCAGAGAGGTGCTGCGTCTCAGCAAGCTGGTGGTGGACAGCCACGTGCAGTACAGACTGGGAAATGTTGATGCCTTCCAGTTGTCTGATGGGCTGCAGTACATCTTCGCCCATGTGGGTCAGCTGACAGGCATGTACCGCTACAAGTACAAGTTGATGAGACAAATCCGGATGTGCAAAGATCTGAAGCATCTCATCTACTACCGGTTCAACACTGGTCCTGTGGGCAAGGGTCCAGGTTGTGGCTTCTGGGCTCCCGGCTGGAGAGTGTGGCTGTTCTTCATGAGGGGGATCACTCCGCTGTTGGAGAGGTGGCTGGGGAATCTGCTGGCCAGGCAGTTTGAAGGACGTCACTCCAAGGGTGTGGCCAAGACAGTGACCAAACAGCGTGTGGAGTCTCACTTTGACCTGGAGCTGCGTGCTGCTGTGATGCATGACATCTTGGACATGATGCCTGAGGGCATCAAACAGAACAAGGCCAGAACCATTCTGCAGCACCTCAGTGAGTCCTGGAGGTGCTGGAAGGCCAACATCCCCTGGAAGGTGCCAGGCCTGCCCACTCCCATTGAGAACATGATCCTGCGCTACGTGAAGGCTAAAGCTGACTGGTGGACCAACACTGCCCACTACAACCGTGAGCGAATCCGCCGCGGAGCCACTGTGGACAAGACTGTGTGCAAGAAGAACCTGGGGAGACTGACCCGTCTGTACCTGAAAGCTGAGCAGGAGAGACAGCACAACTACCTGAAGGATGGACCCTACATCACAGCTGAAGAGGCGGTAGCCATCTACACCACCACTGTTCACTGGCTGGAGAGTCGGCGCTTCTCGCCCATCCCTTTCCCTCCACTGTCCTACAAACATGACACCAAGCTGCTCATCCTGGCCTTGGAGAGGCTCAAGGAGGCGTACAGTGTGAAGTCGCGTCTGAaccagagtcagagggaggagctGGGGCTGATTGAGCAGGCTTACGACAATCCTCACGAGGCCTTGTCCAGGATCAAACGTCACCTGCTCACCCAGAGAGCCTTCAAAGAGGTGGGTATCGAGTTCATGGACCTGTACAGTCATCTGGTGCCCGTGTATGATGTAGAGCCCCTGGAGAAGATCACGGATGCCTACCTTGACCAGTACCTGTGGTACGAGGCGGACAAGAGACGCCTCTTCCCACCCTGGATCAAACCTGCTGACACTGAACCACCACCACTGCTGGTCTACAAGTGGTGCCAAGGCATCAACAACTTGCAGGACGTGTGGGAGACGGCGGAGGGAGAGTGCAACGTGATGCTCGAGTCCCGCTACGAGAAGATGTATGAGAAGATTGATCTGACCCTGCTCAACAGGCTGCTGCGTCTTATTGTGGACCACAACATCGCTGATTACATGACCGCCAAGAACAATGTGGTCATCAACTACAAGGATATGAACCACACCAACTCCTACGGCATCATCAGGGGGCTCCAGTTTGCCTCATTCATTGTACAGTACTACGGTCTGGTGATGGACCTGCTGGTGCTGGGCCTGCACCGTGCCAGTGAGATGGCCGGCCCACCTCAGATGCCCAATGACTTCCTCAGTTTCCAAGACACCCCCACGGAGAGCGCCCACCCAATTCGTTTGTACTGCCGCTACATCGACCGCATCCACATCTTTTTCAGGTTCTCTGCTGACGAGGCCAGAGATCTGATTCAGAGGTACCTGACGGAGCACCCAGACCCCAACAATGAAAACATAGTGGGTTATAACAACAAGAAGTGTTGGCCACGTGATGCCCGCATGAGACTGATGAAGCACGATGTCAACCTTGGACGTGCTGTGTTCTGGGACATCAAGAACCGCCTGCCCAGATCAGTGACCACTGTCCAGTGGGAGAACAGCTTTGTTTCGGTCTACAGCAAAGACAACCCCAACCTGCTCTTCAACATGTGTGGCTTTGAGTGCCGCATCTTGCCAAAGTGCCGCACCAGCTATGAGGAGTTTACCCACAAAGATGGTGTGTGGAACCTGCAGAACGAGGTAACCAAAGAGAGGACAGCCCAGTGTTTCTTGCGTGTGGATGATGAATCGATGCAGCGCTTCCACAACAGAGTGCGCCAGATCCTGATGGCCTCTGGATCCACCACATTCACAAAGATTGTGAACAAATGGAACACAGCTTTGATCGGTCTAATGACATACTTCCGTGAGGCTGTGGTCAACACCCAGGAGCTCCTGGACCTGCTGGTGAAGTGTGAGAACAAGATCCAGACGCGTATCAAGATCGGCCTGAACTCCAAAATGCCTAGCCGTTTCCCTCCTGTAGTCTTCTACACTCCCAAAGAGTTGGGCGGCCTTGGCATGCTGTCTATGGGCCATGTGCTTATTCCACAGTCAGACCTGCGgtgGTCCAAGCAGACAGATGTGGGTATCACCCACTTCAGGTCTGGAATGAGCCATGAAGAAGACCAGCTGATTCCTAACCTGTATCGTTACATTCAGCCGTGGGAGAGCGAGTTCATTGACTCCCAGAGGGTTTGGGCTGAGTATGCCCTCAAAAGACAAGAGGCCATTGCCCAGAACAGgCGTCTGACCCTGGAAGATTTGGAGGACTCGTGGGACAGAGGAATTCCTCGTATCAACACACTTTTCCAgaaggacagacacacactggctTATGACAAAGGCTGGAGAGTCAGGACCGATTTCAAACAGTACCAGGTGCTGAAGCAGAATCCATTCTGGTGGACCCACCAGAGGCACGATGGCAAACTGTGGAACTTGAACAACTACCGCACAGACATGATCCAGGCTCTGGGAGGTGTGGAGGGCATCCTGGAACACACACTCTTCAAAGGCACTTACTTTCCCACCTGGGAGGGTCTCTTCTGGGAAAAGGCGAGTGGCTTTGAGGAGTCCATGAAATGGAAAAAGCTGACCAATGCCCAGAGGTCTGGTCTGAACCAAATCCCCAACCGTCGCTTCACACTTTGGTGGTCACCCACCATCAACAGAGCCAACGTGTACGTGGGTTTCCAGGTACAACTCGACCTGACAGGAATCTTTATGCATGGCAAGATCCCCACGCTGAAGATCTCCCTCATTCAGATCTTTAGGGCTCACTTGTGGCAGAAGATTCATGAGAGCATTGTCATGGATCTCTGTCAGGTGTTTGATCAGGAGCTGGATGCTCTTGAGATTGAGACGGTGCAGAAGGAGACCATTCACCCCAGGAAGTCATACAAGATGAACTCATCTTGTGCAGACATCCTCCTCTTTGCATCATACAAGTGGAACGTCTCTCGACCGTCTCTGCTTGCTGATTCAAAGGACGTGATGGACAGCACCACCACACAGAAGTACTGGATCGACATCCAGCTACGCTGGGGTGACTATGACTCGCATGACATCGAGCGCTACGCCAGGGCCAAGTTCCTGGACTATACCACCGACAACATGAGTATCTACCCCTCCCCCACGGGTGTGCTCATTGCTATCGACCTGGCTTACAACCTCCACAGTGCGTATGGTAACTGGTTCCCTGGAAGCAAGCCTCTGATCCAGCAGGCCATGGCCAAGATTATGAAGGCCAACCCTGCCCTGTACGTGCTCAGGGAGCGCATCCGCAAAGGTCTGCAGCTGTACTCCTCTGAGCCCACTGAGCCCTACCTGTCCTCGCAGAACTATGGAGAACTCTTCTCCAACCAGATCATTTGGTTTGTGGATGACACCAACGTGTACCGAGTCACCATCCACAAGACCTTTGAGGGTAACTTGACCACAAAGCCCATCAATGGAGCTATTTTCATCTTCAACCCCAGGACTGGTCAGCTCTTCCTCAAGATCATTCACACATCTGTGTGGGCTGGACAGAAACGTCTGGGACAGCTGGCCAAATGGAAGACAGCTGAAGAAGTGGCTGCCCTGATTCGCTCCCTCCCCGTGGAGGAGCAGCCAAAACAGATCATTGTAACCAGGAAGGGCATGCTGGACCCTCTGGAGGTCCACTTGCTTGACTTCCCCAACATCGTGATCAAAGGGTCTGAGTTGCAGCTGCCCTTCCAGGCCTGTCTGAAGGTAGAGAAGTTTGGAGACCTGATCCTGAAGGCTACAGAGCCTCAGATGGTGCTGTTCAACCTCTATGACGACTGGCTCAAGACAATCTCGTCTTACACAGCCTTCTCCCGACTCATCCTGATCCTCAGAGCGCTCCACGTCAACAATGACCGGGCCAAGGTGATCCTGAAACCTGACAAGACAACTATCACCGAGCCCCATCACATCTGGCCCACGCTCACTGACGAAGAGTGGATCAAGGTGGAAGTGCAACTCAAAGATCTCATTCTGGCAGATTATGGCAAAAAGAACAACGTGAATGTGGCCTCACTGACCCAGTCTGAGATCCGTGACATCATCCTGGGTATGGAAATCTCTGCTCCGTCACAGCAGCGTCAGCAGATTGCTGAGATTGAGAAGCAGACTAAAGAGCAGTCGCAGCTCACAGCCACGCAGACCCGAACCGTCAACAAGCACGGCGACGAGATCATCACCTCCACCACCTCCAACTATGAGACCCAGACCTTCTCCTCTAAGACAGAGTGGAGAGTCAGGGCCATATCTGCTGCCAACCTCCACCTCCGAACCAACCACATCTACGTGTCATCTGACGACATCAAGGAGACGGGCTACACCTACATCCTGCCCAAGAATGTCCTCAAGAAGTTTATCTGCATCTCAGATCTGCGTGCACAGATTGCAGGCTACCTGTATGGCACCAGTCCACCAGACAACCCCCAGGTGAAGGAGATCCGTTGTATCGTCATGGTACCACAGTGGGGGACACACCAGACTGTCCACCTGCCCAACCAGCTGCCTGGTCATGAATACCTTAAAGAAATGGAGCCCCTCGGCTGGATCCATACCCAGCCTAATGAGTCGCCCCAGCTGTCACCACAGGACGTCACCACCCATGCAAAGGTCATGGCTGACAACCCTTCGTGGGACGGAGAGAAGACCATCATCATCACCTGCAGCTTCACCCCAGGCTCGTGCACGCTTACAGCCTACAAGCTGACACCCAGTGGCTATGAGTGGGGTCGGCAGAACACCGACAAGGGCAACAACCCTAAAGGCTACCTGCCGTCTCACTATGAAAGAGTGCAGATGCTGCTCTCTGATCGCTTCCTGGGCTTCTTCATGGTGCCTGGCCAGGTGTCCTGGAACTACAACTTCATGGGTGTTCGTCATGACCCCAACATGAAGTACGACCTGCAGCTGGCCAACCCCAAGGAGTTCTACCATGAAGTCCACCGGCCCTCGCACTTCCTAAACTTTGCCTCCCTGCAGGAGGGTGAGATCTATAACGCAGACCGTGAGGACATGTATGCCTGA

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0017070 U6 snRNA binding molecular_function
GO:0030623 U5 snRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27747 lncRNA downstream 22786 29443337 ~ 29468887 (-) True G20408
TU27746 lncRNA downstream 57667 29433055 ~ 29434006 (-) True G20407
TU27671 lncRNA downstream 109382 29362929 ~ 29382291 (-) True G20350
TU27668 lncRNA downstream 130746 29359442 ~ 29360927 (-) True G20348
XR_005641703.1 lncRNA downstream 193251 29297340 ~ 29298422 (-) True LOC120573394
TU27770 lncRNA upstream 24187 29532566 ~ 29553100 (-) True G20425
TU27776 lncRNA upstream 44935 29553314 ~ 29553568 (-) True G20431
TU27822 lncRNA upstream 85025 29593404 ~ 29598747 (-) True G20458
TU27827 lncRNA upstream 96460 29604839 ~ 29606154 (-) True G20463
TU27851 lncRNA upstream 144764 29653143 ~ 29656085 (-) True G20480
XM_039780256.1 mRNA downstream 1029 29477893 ~ 29490644 (-) True LOC120545703
XM_039780263.1 mRNA downstream 1031 29477893 ~ 29490642 (-) False LOC120545703
XM_039780248.1 mRNA downstream 14119 29469093 ~ 29477554 (-) True LOC120545693
XM_039792271.1 mRNA downstream 27441 29458234 ~ 29464232 (-) True LOC120553635
XM_039821887.1 mRNA downstream 84490 29386104 ~ 29407183 (-) True foxn1
XM_039826430.1 mRNA upstream 10761 29519140 ~ 29526322 (-) True aifm4
XM_039781806.1 mRNA upstream 211637 29720016 ~ 29771338 (-) True sept4b
XM_039781792.1 mRNA upstream 214396 29722775 ~ 29771339 (-) False sept4b
XM_039781852.1 mRNA upstream 214396 29722775 ~ 29771338 (-) False sept4b
XM_039781802.1 mRNA upstream 214396 29722775 ~ 29731751 (-) False sept4b
TU27758 other downstream 43018 29447170 ~ 29448655 (-) True G20417
unassigned_transcript_100 other downstream 1341021 28150580 ~ 28150652 (-) True trnar-acg
unassigned_transcript_98 other downstream 1425276 28066325 ~ 28066397 (-) True trnam-cau_1
TU27044 other downstream 2402609 27088606 ~ 27089064 (-) True G19840
XR_005641066.1 other downstream 3045738 26434281 ~ 26445935 (-) False LOC120570434
unassigned_transcript_101 other upstream 4270 29512649 ~ 29512720 (-) True trnaw-cca
TU27977 other upstream 459414 29967793 ~ 29972330 (-) False im:7138535
TU28102 other upstream 658096 30166475 ~ 30171816 (-) False cbl
TU28193 other upstream 1177832 30686211 ~ 30690379 (-) False spa17
TU28195 other upstream 1177832 30686211 ~ 30690425 (-) False spa17

Expression Profile