RNA id: XM_039778738.1


Basic Information

Item Value
RNA id XM_039778738.1
length 6354
RNA type mRNA
GC content 0.47
exon number 20
gene id pitpnm3
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 36985052 ~ 37097798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACGGTGACAGGGAGGAGGACGGACGCCCTTCAGGAGCTGCAGCCGCGGACGTGCGCGCACCGCTGGAGGCAGTCGAGCTGCAGACCCGGGTCCGGTTTGGAGAAACTCGGGCTGATGTTAGCGCCAGAGCGAGAAGAGAGAGCTGGCTGGGCATGACATGTGAGCCAACGGTGCACAGATAAGACAAACAGCGAAAGGATGTCTGCGCCATGGGCGGGTCGGCGCTCTGAGAGACTTGACACAGGTGAATGAGAGCACAGCTGCAGATCTTTTCGGGTTTTCCTAGTTCCCCTCCCCTCTCCACAGCGAGAGGACACCGACACGGCAGCTGCATCCCCCCGTGCCTGAGAGGGACGGAGGAAACGTTACCGCGCAGACTAACGTGACCGCTTTACTGAGACACACGGGAGAGGACACAATGTCAAAGGAGACGAGAGGTAAAGGATCATCACGTAAGCACAGCGCCTCTCATTGGTGTCTGCAGAATATTGCACAAGAATCAGTTGACAGCTCCGATGACGAGTTCTTTGATGCCAGAGATGTTATGGAGGGGAAGAGCGCCATTCTGCTGGGCATGAGTCAGTGGAACTCAAATGACCTGGTGGAGCAGATTGAAACTCTGGGACACATGGAGGACCAGTCACATGAGGGTCTCTACCAGCTGGGGGGTCCACGCTGCCCCCCTCAGAGCAGCATTGAAGGACTGGAGGACATAGAGAGGAAATGTAAGACGCATGTGCTGCTGCTAGTGGTGCATGGGGGAAACATCTTGGACACAGCAGGCGGAGACCCCAGCACAAAGGCTGGCGATGTGGCCACCCTGACGTCAGTGCTGGATAAGGTGACGTGGGCGCATTTCAAGGCTGCCGCCGAACACGTGAAGATCCAGCTGGTGCCATGTCCGGCCGTGTGCGCTGAAGCCTTCTCCCTGTTGTCCAATCTGAACCCATACAGCTATGACGAGAGCTGTGTGTCCAGTAGCGTGGACCACCTGCCCCTGGCTGCCCTCCCGCTCCTTGCTATCGTCTCACCTCGCTACCAGGATGCTGTTGCCACAGTGATCACCCAATCCAACCAGGTCTACCACAGCTTCCTGCAGTCAGAGGATGGCCAGGGATTCACGGGTCAGGTATGCCTGATGGGCGACTGTGTGGGAGGTGTGCTGTGCTTCGACGCTTTGTGCTTCAGCAACCACCAGAGGCCTGGCAGccccaacaacagcagcagaaacaACAGCACTGAGAGCCTGAAGGATAACTCGGGCCTACTCGGGGAGTCCAGCCCGGGTCTGAGTTCTAGCAAGAGGCTCAGCAAGAGCAACATTGATATCTCCGCCCCCAACGAAGGGAACGGCCAGTGCGGGCCGCCGCTCAGCCGTAAGCAGAGCGACTCTTATGACGGAGACACCTCGTCCACGGGTCAGCACAGCTTTTTTTCCAGTTTGATGAAGGACAGTGTGGAGGTGCGTGGAGGCAGTAGCACCAGTCTGGTGTTGAATCCCGGTCGATTTGACTTTGAAGTGTCAGACTGCTTCCTGCTGGGCTGTCCACTGGGCCTTGTGCTGGCCATGAGGCGCACTGTGCTGCCTGCTGTCCAGGTAAGTCAGCTGCATCCAGCCTGCTCTCAGATTTTCAACCTGTTTTACCCTTCGGACCCTTCAGCCTCCAGACTGGAGCCGCTGCTGCAGCCTCTCTTCCACAAGTTGCCACCATATGCTGTGCCGCGCTATCAGCGCTACCCTCTAGGAGATGGACGCTCTCTGCTAATAGCGGAGAGTATCCAAGGccattcaaatgtgtttttggaaGGTGAGCAGTCTCCTAAAGGTCCAGCTTCACAGACGTCCTCTGAGACAAagagtgaaggaggaggaggaggaggtggaggaggagaaggagaagagggagGTCGTAGAGCCAGCGTGACCAGTGTGGAAAGTGAAATGTCGATTTGCTCCATTGGCCAGCTGGGAAACACTATCGCGAACATTTCCGGTAGCTGGTGGGGCTCCAAAAGGCTGGATTATGCTTTGTACTGCCCTGATGTGCTGACAGCCTTCCCAACAGTGGCTCTGCCTCACCTTTTCCATGCATCCTACTGGGAGTCCACTGATGTAGCAGCCTTTGTTCTCCGGCAGCTCATGCGATGTGACTGTGTGAAGACCCAGGAAGCGGACAAGTTGGGCTCTGCTCCGTTCTCTCCCTCCAGCCCACGAGAAAAATGGCTCAGACGCAGGACACATGTCAAACTAAGGAACGTCACTGCCAACCACAGGGTGAATGATGTCATTTCCACTGAGGATGGGCCTCAAACTCTGGTTGGTCGCTTCATGTACGGTCCCTTGGACATGGTCACTCTGACTGGAGAAAAGGTGGATGTCCTGCTAATGACACAACCTCAGTCTGGACGCTGGGTGCACTTTGATACGGAGGTGACCAACAGCAGCGGCAGAGTGGCATATACCATACCCAAGAGCAAGAAGCTCGGCCTGGGAGTCTATCCAATTAAAATGGTGGTCAAGGGTGATCAAACTAGTGCAGAGGCCTACCTGACTGTGTTGCCACGGAGCATGGAGTGTGTGGTCTTCAGCATCGATGGCTCTTTTGCTGCTAGTGTGTCAATCATGGGCAGTGACCCCAAGGTTCGCCCCGGAGCTGTTGATGTCGTCAGGCATTGGCAGGACCTGGGATATCTGATCATCTACATCACAGGCCGCCCTGATATGCAGAAGCAGCGTGTGGTGTCCTGGCTCTCGCAGCACAATTTTCCCCATGGGATGATCTTTTTTTCTGAAGGCTTGGTTCATGATCCCCTGCGACAAAAGACCATCTTCCTCAGGAACCTCATACAGGAGTGTCACATTAAGATCAACTCTGCTTATGGCTCCATGAAGGACATCTCTGTTTACAACATGCTCGGCCTCTGCCCCCAACAGATCTATATTGTTGGCAGACCTTCGAAGAAGTACCAAAATCAGTGCCAGTTCCTGAGCGAGGGCTATGCAGCACACCTCTCCACCCTTCAGTTTGGGCACAGAGCAAGACCCAAGAAATCCCCTTCAGTTCGTATGGTCCTAAGGAAGGGCTCATTTGGTCTCTCAGCGAAGCCTGACTTCTTGTGTAAGCGCACCCACCTGCGCAGGACCATGTCAGTGCAACAGCCCGACCCGCCGTGCACACCCAACCCAAAGCCTGAGCGAGCCCAGAGCCAGCCGGAGTCAGATAAGGACCACGGGGGAGGAGGCGGACAAGGCCCATGGGGACGGCCCTCCATACTTCGTGGAGACACCACTCCCTGACATCCAAAAAGAGATGGAAGGATTGCAGGAGGATAGAAGAGGAGAACAAAGCGGTCATAGTGTCCAGGGCCAAATGTCACCTCTACCTACTGTACATGTACATTGGATCCTCTGCTGGTATCCCTCGCAGCTCAGCTTTACCTCCTGCTTGGCCCTCCACACTTTGCCACCTGTTcggctcttcttttttttccgtgACCCGCTTGGCGGATTACGTCACTTAGTCTTTGTGCCTGAAACTTTAAACAGTTGCCGAGGGATGGTAATGATTTTTGCGAATGTCTGTGTCAAGTTAAATTGTGTCCAATTGTAAAATCAAAAGAATGTACTTGAGataattgatatatatatattgatatataattgatattcatgcacacacaaacacttcagAGGATGACAAATGGGACGACAGAGGGGACTTTGAACCTGTTGAGACTTTGGCAACAGATTAGCAGACTGCTGTGCTGACAGGTGGCCATGTTGACTGACTCCTGCACTAACCATCCACCCATGTAAATAGTCCACACTCATCATCTCCGTGTGGGCCTTTGGACACAGAAGCACTGTGACATTTAGGTTCAATATGTACACGAGCTCTGCGATCTGAAGCCCCAATGAGCCGACCTTACCGAACACTGGCCTCTGCCTGCATTCCACTTCCACTGATAGATGTCTCCCTCGCATTGTGGTTACTACCACCTTCCGTCCCCACAACCAGTCTGGCAGAACAGGCCTTCCGAAAGCCGCCTCAGACCGGGTCAGCTCGCGCACGGCTTGGGCCACTGAGGTCGCATTTGCACTATCGAAGTACACCGCAGTGGTTCTCAATTTAGCTGCAGTACTCACTTCAGAAACAAAGAGTTGTATTTGTAGTTCTAGTTTTTCCTGCACATTGTGCACTGTTGCTGCCTGTTGGTTACAGTAACTAATAGAGGTTTTAAACAGAAATAGTTTGTAGGAAAGTATTGGTTTGACCAAAAAATGTTTACAAATTGATAGACAGATGTAAAAAGTGATCAGAACTTCTTCGTGCTTAAAATGACAATGTAATTATCATCATTGGCAGCATTAGTTCACTTTCTTGGTAGTAGTTGCAGTAGCTTGCAGAATATTGTACAACACACCCCATGCCAGTTGAAATTCCACTACAGCTGCACTGGAACCAATAGATTTGTGTTGAAATCCAATGCTGTCTTGTGCACTCTGGGTTGAATTGAGTCTTACTGTGGCCATGTTTCAAACAttcaaaaaagtcaaacatatttttctatGAGGAAATATTGTAAATAGAAATATTTTCAATGTATGTTTTTGAACCTTTTGTTGTTTGACTTGTTGAAAGGTTGATTTTTGCCTTaaattgtatttgatgttgtgTAGACATGCAAACTTATCTGATTTGTTTGACCAAAGTATTGAGTTTTACTGTTACTACAGGACAAAGTGCATTTTATGTAATTGGTATTTTGCTTTGACATGttttagatactgtatatatgtatgtgcgtgtgtgagtgagtgtctaGGTTTATTTGTTGTAGAGTTGTATTTATTGTGAACATGAAGACAGCTATGACAAGTGTATGCCTCTGCAGAGGAATCAGAGGACACAGGGAGGCCAGTGTTGGCATAAAGCATGTTCTCACTGCAGCTCACTACTGCCGGCTTTTCACAACTGAGCGTTTATTTTATAGGTTTGGATTGAAGTAGTGTGTGAGCGGATTTCTTAGACAAGGTTTTTATACCTGCTATGAAAGAAAAAGGGCTTAAGAGTTCTAAGGGGCtcttggtttaactgaaaaccTGCAAAGCTGAGTGGAACATCAGAATGGAGCtgtcttgtttttctttcaccGCCTGTACACCATAGGTGCTTCAGTAATTAGCTATTTGATTACTATTAAGTATGTATGACTCCCTGTAGTACCGCCCCTGTAATTGCAgtgcaccgattagcattattGGTAATTATATAATGTTGTAGAAACAATACTGAAATACTTAACTCCATTTCGTTTTGCATTTAAAATGGTAATACTGAAACATTGTCATCCAAGTAACGACATGATCATTCCCATCCATGTGTACACGATAATCAAAGTGAGTTTATAAGTCTGTATTACACATAGTGATATTTTCCTTCCATGATGATACACTGGAGGAGTGAAGTATTTATGCTGGGCAGCATTTTTTACAACAATGTTAGTAAATGGCAAATACTGATCTAATGGTTAAATGGTGATTGTCCTGTGCATGTTAATTATTTGATATTGTTCATTGTCATATTTGTGGTACATTAAACTAATAATAGAGTAGTTATTTCTAAATAAGGGGtgaataatgaataaatactaaatatatattaaataaatatataaatactccTGGACATAAATTCAACCACCACGTTTTGCAATTGCAAATAAGTTCTTGAATTTCttaaaattagtttttaatGGTAAGAAATAGTGAAGTGAGGCTTTGTTACCTCTTACTGTTACCATAGAGGTTTACTCATTTAAAATGGAAACTGACTAATCAGACAAattagtttttctttctttcttttttttacagtaaatactAAAGTCAATTAATCCTGATATTACAGAATAAAAGAAGAGAACAACAGGATATACaatggaaaaatatatatatactgtatatttattgagCGCTTTAAGAGTTACACAATTATTGTCTTCAGTGAAATATGATGACCTCTCACTAAGTTCCAattaatgtaaaattattattattcaccaCATCAAGACTTAACTATTGGGTATTGACCTAATTTGCCATTTATTAACAATTCTTCTGACTTATAGAGTAAGATTTAGTAAGTGAACTAACATTGTGTTACAGCCTCTTCTTCATTTTTGTGGTCTTATTTTGGTCTTTTGAGGACAAAGCACCTGATTTCACTGCTACAAAGTGTATTATTTTGTACAGATCTCCTGTGATGATGAAAATGTTATTGTGTTTATTGGACTCAGTCAATCTATCATTATTGcataaataaagatatttcaCAGATGAAGAATTTA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30157 lncRNA downstream 16488 36965958 ~ 36968564 (-) True G22169
TU30045 lncRNA downstream 294400 36687896 ~ 36690652 (-) True G22074
TU30043 lncRNA downstream 502865 36481831 ~ 36482187 (-) True G22072
TU30039 lncRNA downstream 520824 36462987 ~ 36464228 (-) True G22068
TU30038 lncRNA downstream 522284 36461781 ~ 36462768 (-) True G22067
TU30165 lncRNA upstream 3132 37100929 ~ 37101140 (-) True G22176
TU30170 lncRNA upstream 8472 37106269 ~ 37106646 (-) True G22181
TU30164 lncRNA upstream 14399 37112196 ~ 37123100 (-) False kiaa0753
TU30219 lncRNA upstream 112402 37210199 ~ 37212192 (-) True G22217
TU30238 lncRNA upstream 131849 37229646 ~ 37263430 (-) True G22232
XM_039782537.1 mRNA downstream 63135 36909644 ~ 36921917 (-) True LOC120547112
XM_039782546.1 mRNA downstream 63886 36909644 ~ 36921166 (-) False LOC120547112
XM_039818897.1 mRNA downstream 155584 36812622 ~ 36829468 (-) True wdr81
XM_039789268.1 mRNA downstream 172570 36809696 ~ 36812482 (-) True serpinf2b
XM_039818908.1 mRNA downstream 176775 36775424 ~ 36808277 (-) True rpa1
XM_039786579.1 mRNA upstream 14399 37112196 ~ 37135841 (-) False kiaa0753
XM_039786587.1 mRNA upstream 14399 37112196 ~ 37135841 (-) False kiaa0753
XM_039786596.1 mRNA upstream 14399 37112196 ~ 37135841 (-) False kiaa0753
XM_039786573.1 mRNA upstream 14399 37112196 ~ 37135841 (-) True kiaa0753
XM_039791026.1 mRNA upstream 103301 37201098 ~ 37205999 (-) True mrm3a
XR_005641838.1 other downstream 434938 36460680 ~ 36550114 (-) False dph1
TU29998 other downstream 654643 36318773 ~ 36330409 (-) False taok1a
unassigned_transcript_104 other downstream 1938103 35046878 ~ 35046949 (-) True trnap-cgg
TU29485 other downstream 2503019 34481458 ~ 34482033 (-) True G21674
TU29436 other downstream 2886711 34094562 ~ 34098341 (-) False LOC120548089
TU30252 other upstream 166776 37264573 ~ 37269320 (-) True G22245
XR_005636371.1 other upstream 553662 37651459 ~ 37655795 (-) True si:ch211-105f12.2
XR_005637810.1 other upstream 637068 37734865 ~ 37746270 (-) False p4ha3
TU30601 other upstream 1255263 38353060 ~ 38363688 (-) False robo2
XR_005641089.1 other upstream 1631144 38728941 ~ 38735823 (-) False LOC120570635

Expression Profile