RNA id: XM_039778784.1


Basic Information

Item Value
RNA id XM_039778784.1
length 1550
RNA type mRNA
GC content 0.64
exon number 5
gene id LOC120544909
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4088176 ~ 4138553 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCCTGAGCCGCAGTGAGTTTGTGCAGAGTGTGCGGAGAGTGTAGCGGTCACACAGCCGCAGGAGAGCCGGGTGCTTGCATGCTTTCTGTCCGCTCGGAGCGCCACTTCTCCCCCGGGGAATATCTCACTTCTGTGTCCGCCTTCCCGACGCTTCCGCCCGGCTTCTGATGCGAGTGTGAGCCGCTGATCCGCCGCCATGTCTCCCCGCTgttcctccctccctgccccccctcccccagctCCATCATGCCCATCCTCAAAAACCTCCCAGTGCGCCTAAAAGGCGGCGGCCCGACTCTAGAAAACGCTTGGATCCTACGCAGGATGAGCCTCAACATCACCCCCAACCACCACCATCACAACCCCTTCGACAATGACGACGACAGCATCCACGGCAACGGCGGCCACGGCGACCACTGGTCGCCCGGCAGCTCGCTGCTGGACGGCGACGTGCAGAGGGAACGCAACCCGTTCGAGGACGAGGAGGACGAGAACGAGGCCAACGAGGGGAAGAAGGGGAGCGGAAGTGGAGGCTCGGCGAAGGGATCTTTCAAGTTCATGTCCCCGCTGAAGACTCTGGGGAAGCTGGGGAAGAACCTGAGGTTGTCGGGGAGGAGCAAAGGAAGTGCAACGCCATCCCCGCAGGGCTCGCTGCATGGAACGCCCTCGCCCGCCGAGAAAAAGAAGAGGGGACGGAGGAGCTCTGAAGGAAGTCTGTTGAGGTTTGCCGGGAAATACCGTGACACCCTTGGCTCCCGTAAGGAGTCTCTCATCAACGGCGAGCTGAACTGTTCAGAGAGCGAGTGCGACACAACCAGCCGGCGCCTGTCCTTCATGAAGATGGTGGGCCTGGGGAAGCTGAAGAGGGAGTCCATGAACGACCACTCGTCCCAGGGCCCCGATGATCAGCTGGTGCAGGAGGAGGCCCTGGAGGAGGTCAAACCCAGAGAGCCACTGTCAGTCCTGGAGATCCTGCAGCTGGTGAAGAAGCGAGACCTCCTATTGGCCGACAGCCACATCCTGGAGCTGGAGCAGGAGTGCAGCGAGTCGTCCGAGCCCGAGGACGCCGCTAGCCCGGGCGTGAAGGACGGCGGGCGCCGGAAGGCGAAGGACGTGGAGCTGCTCTACGAGGAGCTGCAGAAGGAGCTGTGGGCCGTCGTCAGGGAGTCGCTACGCTCGCCAACGGCTGGACCCAACCTCGGACTCGTGGTGCAGgtccTGCAGCAGGAGGAGCAGGTAGATAAAGACTGGGCCCAGAGTGCGGCTGCGGCCCCCGGGGCCGAGGCCTCGCGTCTGAAGCAGAGGTGGAGGGGAGGCGGTGGAGGAGCCGCCGGCGGCTCTCTCCCTCAGAAGGCCGGGATTCACCGCTGGAGAGCTGGACCGATACCTGGACCGTCTCCGGCCCCAGCGTGGTGGACGACCTGGGGCGCCGCCAAGAGGAGGAGCGTGGTGTCCATCTACCCCGAAGACTTCCAGCCCTTCCAGGTGAGACGCAGTGACGGGACACACGGAAACACCTGGAAGGATCTCCTCTTACTGGAGACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19333 lncRNA downstream 33092 4028740 ~ 4055084 (-) False LOC120571085
TU19339 lncRNA downstream 37496 4048776 ~ 4050680 (-) True G14491
TU19340 lncRNA downstream 37496 4048776 ~ 4050680 (-) False G14491
TU19341 lncRNA downstream 37496 4048776 ~ 4050680 (-) False G14491
TU19342 lncRNA downstream 37496 4048776 ~ 4050680 (-) False G14491
TU19385 lncRNA upstream 9147 4147700 ~ 4148078 (-) True G14526
XR_005641301.1 lncRNA upstream 78771 4217324 ~ 4222591 (-) True LOC120571793
TU19403 lncRNA upstream 88948 4227501 ~ 4227841 (-) True G14541
TU19587 lncRNA upstream 170899 4309452 ~ 4336344 (-) True G14595
TU19535 lncRNA upstream 173721 4312274 ~ 4312765 (-) True G14554
XM_039778771.1 mRNA downstream 10048 4052192 ~ 4078128 (-) True LOC120544902
XM_039819781.1 mRNA downstream 40387 4033400 ~ 4047789 (-) False LOC120571085
XM_039778759.1 mRNA downstream 72220 3899453 ~ 4015956 (-) True LOC120544895
XM_039819729.1 mRNA downstream 164320 3921782 ~ 3923856 (-) True LOC120571031
XM_039820131.1 mRNA downstream 318780 3739762 ~ 3769396 (-) False LOC120571265
XM_039819516.1 mRNA upstream 523061 4661614 ~ 5252192 (-) False LOC120570840
XM_039819499.1 mRNA upstream 523061 4661614 ~ 5252186 (-) False LOC120570840
XM_039819491.1 mRNA upstream 523061 4661614 ~ 5252186 (-) False LOC120570840
XM_039819466.1 mRNA upstream 523061 4661614 ~ 5252186 (-) False LOC120570840
XM_039819552.1 mRNA upstream 523061 4661614 ~ 5252186 (-) False LOC120570840
TU19241 other downstream 365544 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 695139 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 729979 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 739558 3348428 ~ 3348618 (-) True LOC120554594
XR_005638534.1 other downstream 741056 3346933 ~ 3347120 (-) True LOC120554609
TU19429 other upstream 387987 4526540 ~ 4672863 (-) False G14552
TU19448 other upstream 387987 4526540 ~ 4577885 (-) False G14552
TU19473 other upstream 387987 4526540 ~ 4822250 (-) False G14552
TU19430 other upstream 595696 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 595696 4734249 ~ 4779090 (-) False G14552

Expression Profile