RNA id: XM_039778795.1


Basic Information

Item Value
RNA id XM_039778795.1
length 968
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC120544917
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4150582 ~ 4154516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAAACCCAGCACACACCTGGGAGTTATCGTCACCGTCCTGGTTGGATTCATCCGGCTCAACACGCAGTAAAAACACCAGAAAACCTTTATTCAGAGCTGGAGGTCTTCAGACAGGAAGCCATGTTTGGGAGCGGTCTGGTTGGGTTCTGTCTGCTGGTGCTGGCGCTGGGTTTCCTGGGCCGGCCCGGCCTGGCACACAATGGTAAGATGCATTCAGAGTCTCTCCAGGAGACCGTTGTCCCCGAGCCAGCGCAGTGCCTCGTCTCCAGGATCTACAATCTGATCCGGCCGGCGGAGAGTAAAGACGACCGGAGCTGCTGGCAGGATTGTTTTGCAAAGACGGACTGCCACATGGCGGTGGTCACCAAACGGATCAGCGCCGCACAACAGTGTCTCCTGGTTAACTGTCTGAACCACGGCAACCACTCGTTACCCAGAGATCCCAGCGCAGAGATCACCGTTTACCCAAAGAGCACCATTGACGATGAACTAAGAGCCAATCTCATGAAGCGTGCACATGGAGCAGTTGACGAGAGACTTCGATGTTATGAGCGCGGCTGCCAGTCGGAGAGTCCCAGATTCTTCTACAACACCACCAGTTCCAGGTGTGAGAGGCTCTTCGGTGGCTGTGGGTCCAACATGAAAACATTTAAGACCCTGAAAAGCTGTGCAACTCTCTGCCATAAAAAAGTCCGTTGTTATCTGCCTGTGGAGTATGGTCAAACCCCCCCCGTAGGCCATCTTCCCTTTGGCCCTGACAATGTTTCCAGCACCAACGCTGACACTACAGGCAAGCCTAAAGACACCACCGTCAACTTCTACTTCTATAACGTGTCGAGTGGGAGCTGTGAGGGATTTCACTTCAGAGGCAGTGCGTCCAACGGGAACATCTTTCGGACCGTGCAGGAGTGTGAAAGTCTCTGTGGTGATGTCAAAGGTAACAAATCATTTAATAATAAAGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18842 lncRNA upstream 3839 4146317 ~ 4146743 (+) True G14172
TU18841 lncRNA upstream 7279 4143087 ~ 4143303 (+) True G14171
TU18838 lncRNA upstream 16927 4133199 ~ 4133655 (+) True G14168
TU18832 lncRNA upstream 28529 4077798 ~ 4122053 (+) False G14162
TU18829 lncRNA upstream 28529 4093263 ~ 4122053 (+) False G14162
XR_005641291.1 lncRNA downstream 150 4154666 ~ 4162299 (+) True LOC120571758
TU18919 lncRNA downstream 83061 4237577 ~ 4239285 (+) False LOC120571647
TU18920 lncRNA downstream 91926 4246442 ~ 4252134 (+) False LOC120571647
TU18964 lncRNA downstream 111150 4265666 ~ 4266169 (+) True G14231
TU18950 lncRNA downstream 177003 4331519 ~ 4332125 (+) True G14217
XM_039820162.1 mRNA upstream 607377 3537939 ~ 3543205 (+) True LOC120571287
XM_039778719.1 mRNA upstream 848120 3299916 ~ 3302462 (+) True LOC120544772
XM_039778718.1 mRNA upstream 850686 3297981 ~ 3299896 (+) True LOC120544755
XM_039820116.1 mRNA upstream 852078 3295431 ~ 3298504 (+) True LOC120571257
XM_039819927.1 mRNA upstream 1106432 3034809 ~ 3044150 (+) True gmnc
XM_039820076.1 mRNA downstream 31390 4185906 ~ 4199356 (+) True LOC120571237
XM_039820085.1 mRNA downstream 31390 4185906 ~ 4199356 (+) False LOC120571237
XM_039820095.1 mRNA downstream 31390 4185906 ~ 4199356 (+) False LOC120571237
XM_039820104.1 mRNA downstream 31390 4185906 ~ 4199356 (+) False LOC120571237
XM_039778846.1 mRNA downstream 69076 4223592 ~ 4225317 (+) True LOC120544944
TU18797 other upstream 95497 4048774 ~ 4055085 (+) False G14148
XR_005638374.1 other upstream 802660 3347816 ~ 3347922 (+) True LOC120554338
XR_005638523.1 other upstream 842110 3308282 ~ 3308472 (+) True LOC120554582
XR_005638542.1 other upstream 843599 3306793 ~ 3306983 (+) True LOC120554643
XR_005638519.1 other upstream 845098 3305294 ~ 3305484 (+) True LOC120554577
TU18913 other downstream 209150 4363666 ~ 4372769 (+) False LOC120570718
TU18980 other downstream 213087 4367603 ~ 4420822 (+) False G14246
XR_005641110.1 other downstream 214557 4369073 ~ 4399043 (+) False LOC120570718
TU18942 other downstream 345657 4500173 ~ 4527377 (+) True G14209
TU18878 other downstream 933308 5087824 ~ 5088672 (+) False G14187

Expression Profile