RNA id: XM_039779067.1



Basic Information


Item Value
RNA id XM_039779067.1
length 927
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC120545072
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5970990 ~ 5971916 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGGTAAACTCTACGCAGGTTTCATTTTTCACACTAAGTGCCTATTTTGACACCGGGGTTTTCAAATACTTATATTTTCTCATCatcatatctgtatatatgttaATTATTTGTGCTAATCTTTTGCTGATTGTGGTTATCTGTATGAACAGAAGCTTACATGAACCTATGTACCTTTTTCTGTGCAGCCTGTTTGTAAATGAACTGTATGGTAGTACAGGGTTGTTTCCATTCCTTCTGGTTCAGATCctctctgacattcacactgtttctgctccattctgtttcctgcagatttattgtgtgtatacttatgtgtgtgtagagttttgcaaCTTAGCCGTCATGTCTTATGACAGATATCTTGCTATCTGTTATCCTCTGCAATATAACACACGTATGACATCTAACAAGGTTGCCATGCTTATTGCTCTAACATGGTTATTCCCTTTTCTTGCAATTGTTGTTTTGATATCTTTGAGTGCACCTCTAAAGCTGTGTGGAAACATCATTGACAAAGTTTACTGTGGAAACTACTCCATTGTTAAGCTGGCCTGTGCTGACACCAGAGTGAACAACATTTATGGACTCTGTTACACTGTCATCTCCATCATCATTCCTCTACTTTTAATCCTTTACACTTACATGAAAAtctttaaagtgtgtttttctgGTTCCAAACAGACCAGACAGAAAGCTCTCAGTACCTGCACACCTCACCTCGCTTCCCTGCTTAACTTTTCTTTTGGTGGTTCTTTCCAAATAATACAGAGCCGGTTTGATATGAGCAGTGTACCCAACATGTTGAGCATCTTATTATCGTTATACTTTCTAACATGCCAGCCACTCTTTACCCCAGTGCTGTACGGGCTGAAAATGTCTAAAATCCGCATGATCTGTAAACGTCTGGTGTGTGGTAAAGTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19811 lncRNA downstream 249215 5721239 ~ 5721775 (-) True G14762
TU19798 lncRNA downstream 290216 5674449 ~ 5680774 (-) True LOC120549106
XR_005637329.1 lncRNA downstream 290224 5675410 ~ 5680766 (-) False LOC120549106
TU19791 lncRNA downstream 296717 5633508 ~ 5674273 (-) True G14746
TU19874 lncRNA upstream 54954 6026870 ~ 6030460 (-) True G14816
TU19880 lncRNA upstream 65284 6037200 ~ 6038733 (-) True G14820
TU19881 lncRNA upstream 110577 6082493 ~ 6167461 (-) True G14821
TU19882 lncRNA upstream 110577 6082493 ~ 6164644 (-) False G14821
TU19894 lncRNA upstream 249439 6221355 ~ 6222054 (-) True G14832
XM_039779057.1 mRNA downstream 7120 5962920 ~ 5963870 (-) True LOC120545063
XM_039778991.1 mRNA downstream 22127 5939672 ~ 5948863 (-) True LOC120545043
XM_039778977.1 mRNA downstream 51980 5918054 ~ 5919010 (-) True LOC120545036
XM_039786496.1 mRNA downstream 81013 5889051 ~ 5889977 (-) True LOC120549505
XM_039786470.1 mRNA downstream 96040 5873798 ~ 5874950 (-) True LOC120549493
XM_039779414.1 mRNA upstream 303976 6275892 ~ 6276845 (-) True LOC120545232
XM_039788155.1 mRNA upstream 387327 6359243 ~ 6380456 (-) True pgm2l1
XM_039780301.1 mRNA upstream 415574 6387490 ~ 6393224 (-) False lipt2
XM_039780307.1 mRNA upstream 415574 6387490 ~ 6393211 (-) False lipt2
XM_039780315.1 mRNA upstream 415574 6387490 ~ 6393211 (-) False lipt2
TU19803 other downstream 265013 5703387 ~ 5705977 (-) True G14754
TU19757 other downstream 437163 5510716 ~ 5533827 (-) False G14722
TU19742 other downstream 467560 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 665621 5214769 ~ 5305369 (-) True G14553
TU19570 other downstream 859011 5062988 ~ 5111979 (-) True G14579
TU19916 other upstream 330433 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1049067 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 1049067 7020983 ~ 7032467 (-) False atg16l2
XR_005638460.1 other upstream 1070166 7042082 ~ 7042373 (-) True LOC120554469
TU20319 other upstream 1130450 7102366 ~ 7104090 (-) True G15110

Expression Profile