RNA id: XM_039779094.1


Basic Information

Item Value
RNA id XM_039779094.1
length 939
RNA type mRNA
GC content 0.35
exon number 1
gene id LOC120545109
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6012848 ~ 6013786 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGATAAACTCTTCATATGTTTCATATTTCACTTTTGGTGCATACTTTGATATTGGGATCTTTAAATACTTACTTTTTCTGATCATTATGTGTTTTTATGCTTTAATAGTTTGTGCTAATCTATTGCTGACTGTGGTTATCTGTATGAACAGAAGCTTACATGAACCTATGTACCTTTTTCTGTGCAGCCTGTTTTTAACTGAACTGTTTGGTAGTACAGGGTTGTTTCCATTCCTTCTGGTTCAGATCctctctgacattcacactgtTTTTGCTCCCTTTTGTTTCCTGCAGATTTATTGTTTGAATGTATATGCAACTATACAATTTCAGAATTTAGCCATTCTGTCTTATGACAGATATCTTGCCATCTGTTATCCTCTGCAATATAACACACGTATGACATCTAACAAGGTTACCATGTTTATTGCTCTAACATGGTTATACTCATTTGTTGGAGTTGCTGTCTTGATATCTTTAAGTGCTCctttacagctgtgtgggaACATCATTAACAAAGTCTACTGTAACAACTATATTGTTGTCAAACTGGCCTGCTCTGACACCAGAGTCAATAACATTTATGGACTCATTAACACTTGTGTTGTAATCTTTGGTCCTCTCATTTTAATCATTTACACGTACATCAAGAtccttaaagtgtgtttttctgGTTCTAAACAGACCAGACAGAAAGCTGTCAGTACCTGCACACCTCACCTCGCTTCTCTACTCAACTTTTCTTTTGGTTCTTtctttgaaatattacagagcaGGTTTGATATGAGAAGTGTACCCATGATGTTGcagatttttctgtctttatacTTTCTGACCTGCCAACCAATCTTCAACCCTTTAATATATGGCCTGCAATTGTCTAAAATACGTAGCTTATGTAAAAGTCTTATCTTTGGTAAAACGTCAACTGATGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19845 lncRNA upstream 9934 6002208 ~ 6002914 (+) True G14792
TU19839 lncRNA upstream 92162 5919899 ~ 5920686 (+) True G14788
TU19833 lncRNA upstream 186168 5826342 ~ 5826680 (+) True G14782
TU19822 lncRNA upstream 242293 5770216 ~ 5770555 (+) True G14772
TU19817 lncRNA upstream 265782 5746541 ~ 5747066 (+) True G14767
TU19861 lncRNA downstream 150659 6164445 ~ 6190509 (+) True G14807
TU19862 lncRNA downstream 150659 6164445 ~ 6167412 (+) False G14807
TU19863 lncRNA downstream 150659 6164445 ~ 6165893 (+) False G14807
TU19903 lncRNA downstream 247085 6260871 ~ 6261222 (+) True G14841
TU19951 lncRNA downstream 367937 6381723 ~ 6388400 (+) True G14863
XM_039785093.1 mRNA upstream 269743 5738138 ~ 5743105 (+) True sst1.1
XM_039786321.1 mRNA upstream 292559 5716270 ~ 5720289 (+) True sst1.2
XM_039785737.1 mRNA upstream 300989 5641654 ~ 5711859 (+) True col4a3
XM_039785768.1 mRNA upstream 465515 5543291 ~ 5547333 (+) True LOC120549121
XM_039821261.1 mRNA upstream 551338 5447146 ~ 5461510 (+) True LOC120572059
XM_039779274.1 mRNA downstream 55639 6069425 ~ 6070366 (+) True LOC120545182
XM_039779327.1 mRNA downstream 108271 6122057 ~ 6138120 (+) True LOC120545198
XM_039779339.1 mRNA downstream 127681 6141467 ~ 6142387 (+) True LOC120545205
XM_039779352.1 mRNA downstream 147660 6161446 ~ 6164376 (+) True LOC120545214
XM_039779365.1 mRNA downstream 155433 6169219 ~ 6174510 (+) True LOC120545220
TU19140 other upstream 490967 5510757 ~ 5521881 (+) True G14344
TU19135 other upstream 494699 5513801 ~ 5518149 (+) False G14344
TU18878 other upstream 924176 5087824 ~ 5088672 (+) False G14187
TU18942 other upstream 1485471 4500173 ~ 4527377 (+) True G14209
TU18980 other upstream 1592026 4367603 ~ 4420822 (+) False G14246
TU19963 other downstream 394257 6408043 ~ 6413375 (+) False spcs2
TU19929 other downstream 400801 6414587 ~ 6416070 (+) False spcs2
TU19934 other downstream 400801 6414587 ~ 6415544 (+) False spcs2
TU19935 other downstream 400801 6414587 ~ 6415544 (+) False spcs2
TU20165 other downstream 959059 6972845 ~ 6989396 (+) True G15019

Expression Profile