RNA id: XM_039779119.1


Basic Information

Item Value
RNA id XM_039779119.1
length 1957
RNA type mRNA
GC content 0.51
exon number 16
gene id sars2
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19671088 ~ 19681020 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACATTAACCACAAGACAAACATGGCGACCTGCATCGGCATGGTCGCAAGAGTTGGAGGCACCGTTCTGACTGCGTTAAAGCCGGTAGCGAGACAATGTTCAAGGCAGAGGACACGTGTGTTCATCCCGCACCGCTTTTCACACGGAGCCCGGAGCAGTTTGTACGAACATGTCCGTGAAGGTTATAGCGAGAAGCCCGAGCTCGATATGAGAGCAGTGTGTGAGGAGACCGACAAAGTCATAGCAAATGTAGAGAACAGGAAGGGGGACCTGCGAGGGGACGATGTCAGGAATATTGTATGTGTGTGGCAGGAGCTTCAGGCAGTGAAGACAGAAATCTCGGGGCTGGAGGAGCAGAAGAAACACATCAGTGACACAGTCAAAGCACTAGTGGCCAAGAACGACAAGAAAGCCCTTGGCAATCTTCCAGAGTACACCCAGGCTCTGCAGAAGGGCCGAGAGATCCGCAACAGACTGAATCAACTTTACCCCAAAGAGACTGAGCTGGATCAGGAACACTATGGACGAGCGCTCAGACTGCCAAACGCCACACACCCTGATGTgccAGTTGGAGACGAGAGCCAGGCAAGAGTGGTGGAGCTGGTTGGACAGAAACCAGaGTTTGACTTCAAGCCTAGGGGCCATGTAGAGCTGGGGGAGGAGTTGGGTCTCATCAGGCAGCGACATCTAGCTCATGTCTCAGGCCACAGGTCCTACTATCTGAGGGGAGCAGGGGCCAGACTTCAGACTGCACTCCAAAATTTTGCCCTTGACACACTGCAGCGACGGGGCTTCATTCCTATGGTTGTGCCTGACATGCTGAAGGGGGCAGTGTTTGAGGGTTGTGGAATGCAGCCCAACGCCCATCGCTCTCAGGTCTATTCTCTGGACCAGGCCCGTTTCCCAGACCTCAATCTGGCTGGGACTGGAGAGGTCGGGGTGGCAGGCTATTTCATGGATCATGCAGTAAACTGGAAGGACCTGCCTGTCAGGACAGTGTGCAGCAGCACCTGCTACAGAGCAGAGACGgacacaggcagagagacatgGGGGCTCTACAGAGTACATCACTTTAACAAGGTGGAGATGTTTGGAGTAACAGCAGATGAGACAGGAGAAGAGAGCTCTCAGCTGCTCGGGGAGTTTGTCTCTTTGCAGAAAGAGATGTTCTCTGCACTGGAACTACACTACAGAGTGCTGGACATGCCGACACAGGAACTGGGTCCTCCTGCACACCGAAAGTATGACATTGAAGCATGGATGCCTGGGAGGGACAGCTATGGAGAGaTTTCCAGTGGATCCAACTGTACAGACTACCAAAGCAGACGCCTCAACATCCTGTATGAGAGAGAGGATGGCAGCCTGCAGTACGCCCACACAGTGAATGCTACAGCATGTGCCATCCCCCGAACCATCATCGCTATCCtggagactcatcagaccaaaGATGGAACAGTGCGTGTCCCCCGGGCCCTGCAGCCTTATTTGGGCCTAGAAGTGATCGAGACGCCAAAGTACACTCCACTGAAATACATCGGACCCAACCAGCCCAGTCGACCACCCAGGCCTGCTCCCAAGACCAGATGACACAAATACAAGCACACACCTGTAAACGCCTGAGGTGGGAGCCAGTTAACATTCAACCATCAAGTCAGACAAGAAAGTTGATATTTAACACTCATAAGGATGTTTCATACATTTTGTTGTATGACGGTTGTTAATGATCTCCATAGTCCTTCAGATTAAATGAAATACAGTCTGACTTTATAATTGTGTGAGTGCAACAATGTTTTAAGCCGATGGATCAGACCTTACCATCAGTTCCATTGtcactgtaaatatatttgtctttttttgtcaaaggCCATGAAATTGTGAATGCTAGCATGGATGTGTCTTGTCCAGCTCATGAGGACCATAATAAGGAATAACCAATAAAGATACGTCTTTAATTTC

Function

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24860 lncRNA downstream 21436 19649216 ~ 19649652 (-) True G18184
TU24852 lncRNA downstream 42448 19625403 ~ 19628640 (-) True G18179
TU24813 lncRNA downstream 128417 19456213 ~ 19542671 (-) True G18155
XR_005641638.1 lncRNA downstream 129958 19538375 ~ 19541130 (-) True LOC120573122
TU24780 lncRNA downstream 265727 19383403 ~ 19405361 (-) True G18127
TU24875 lncRNA upstream 20208 19701228 ~ 19717285 (-) False fbxo46
XR_005637280.1 lncRNA upstream 73867 19754887 ~ 19755993 (-) True LOC120548779
TU24895 lncRNA upstream 170884 19851904 ~ 19856310 (-) True G18216
TU25072 lncRNA upstream 372200 20053220 ~ 20054134 (-) True G18329
TU25089 lncRNA upstream 435265 20116285 ~ 20119606 (-) True G18337
XM_039779144.1 mRNA downstream 517 19663258 ~ 19670571 (-) False LOC120545125
XM_039779133.1 mRNA downstream 518 19663258 ~ 19670570 (-) True LOC120545125
XM_039779183.1 mRNA downstream 17264 19650041 ~ 19653824 (-) True psma6l
XM_039790820.1 mRNA downstream 33686 19633493 ~ 19637402 (-) True LOC120552636
XM_039823287.1 mRNA downstream 62067 19598150 ~ 19609021 (-) False nop53
XM_039779212.1 mRNA upstream 20207 19701227 ~ 19717307 (-) True fbxo46
XM_039787058.1 mRNA upstream 119731 19800751 ~ 19810029 (-) True si:ch211-11n16.2
XM_039825868.1 mRNA upstream 191459 19872479 ~ 19891955 (-) True LOC120575197
XM_039825895.1 mRNA upstream 211522 19892542 ~ 19906151 (-) False LOC120575210
XM_039825903.1 mRNA upstream 211522 19892542 ~ 19906151 (-) True LOC120575210
TU24394 other downstream 1448234 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1519120 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2192244 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 2740094 16848161 ~ 16930994 (-) True G17597
XR_005637172.1 other downstream 3610680 16049872 ~ 16060408 (-) False sdhdb
XR_005637451.1 other upstream 121693 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 456322 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1413162 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1565819 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 1983075 21664095 ~ 21671479 (-) False gdpd5b

Expression Profile