RNA id: XM_039779289.1


Basic Information

Item Value
RNA id XM_039779289.1
length 3569
RNA type mRNA
GC content 0.54
exon number 4
gene id si:ch211-137a8.4
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10055994 ~ 10119839 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagagagagagagagagagagagagagagaggatggctGGTAGGATTTAGCCCCGGCAGCAGCGTCTTTTCCCGTCCAACACAACAAGCTTATTACCTTTCTCTCCACGCGCTTTTGGAAACGGATTTACGCGCACTAAAAGGAGGAGTTTGGAGGACTAGTAGGATGCTGAGTATCTTTCCTCCTCGCCACTGTTCTCCACCCTGCTCTCCATGACCTGAGAGCACCACCCCAGCAGGAGGAACGAAACAccagaacgagagagagaggagggcagAAGGccagggaaggaaggaaggaaggaaggaaagaaggaaggaacacgtttttttattttgttgttggttGTTTTCCCTTTTCCGAAATGGCAGCGACAGAGGCCAACGCGGCGCCGGTGGTCCAGGAAGACGGGAAAAACCCAGAGAGCAAGCCGGCGGAGGTCGAGCAGCCGGCCAATAACGCCAACACAAACTCAGAGACTATCAACAGCGAGGTTGTCGACAAAGACGGTACCGCTGTCAACAGCGAGGTTGTCGATAAAGACGGTACCGCTGTCAACAGCGAGGTCGCGGACAACAAAGAGACCGTGAATAACGACACAGCAGCAGTGGCGGGAGCCGAAGACGGAGATGCGGCAGCGCCAGCGAGCGACGAGGCAGCCGCAACGCCTCAGAACTCAGAAaatgcctcctcctcctctgcggAGCCCAAGACCTCGTTCCTGGACTCTTTCCTCAACAAGAGCGGCCTGGGGAAGGTGATGGGaggaaggaagaagaaagagacgATCACTGCCGCCACTGCCGCCGGAGGAGAGGAGAACGCCGCCGAGGGAGGGGAGAAGGACGGAGAGAAAGGAGGCGAGGAGGCCGCGGCAGCGTCTGAAGCAGGAGCAGAGGGCGGCGGCGCTGACGACGGAGAGGGCGCGATAGAGAAAGCGCCGGAAAACggagagaaggaagaggagaagaaggcGGAGAAGGGCAAACCGGCGGAGGCCAAATCCACGGTTCGAGATCTGATCAGGAAGCCGGTGGCGAGGATCTTCTCCCATCGCAGCGCCGAGAAGAAGGACGTGAAGGTTCGATCCAAGTCCCTGGACCGGCTGGATCCCGAGGCACTCAACGCCGTGGCGGAATCTGCCGCGGCGGACTCTACCGCGCCGGACGGAGGGGCCTCGGCAGCGGGGGGAGCAGACGAAGGCGAAGAGGGAGAGCAGAAAGCCTCGTCGTCGTCCTCGGCAGCCACCACCAAGCACATGAGGCGCTGGCACTCCTTCAAGAAGCTCATGGCTCAGAAGGGGCACAAGAAGAGCGGAGGAGAGGATgtaaaggaggaggaaggagagggaggaggagactCGTCCACGCTGGACTCCAAGGAGTCCGGGCAGAAGAGGTGGAAGCTGAAACGCTCCTGGACCTTCCAGGGTTTGAAGAGGGACCCGTCGATGGTCGGCATCAGCGGGAAGGCCAAGGGCTCGGACAAAGACTCTGCTGCCGACAACGCAAAGCCGGAGGAGGAAGTGGCGGCGGCAGTGGCGGCCGCAGCGGGAGAAGCAgcggaggaggaaggagaggaggccaaggaggagggaggagcagCAACAGAGGAAGCCAAGgcggagggaggagaggaggaaaaggaaaaggctgagggaggggaggaggagaagacagcagcagcagcagccgcaccGGGTGGTGGGACGGTGACGCAACACGCCAACGAGATCTGGACCTCCTTCAAGAAGCGCGTCATACCCAAGTCCAAACGCGCCAACACAGAGTGCGCTCCCTGCGGGGAGGAGGATCCAACCACAGCTGCCGCCTCAGGTGAGGATGGAGCAGCAGAGGAGGGCAAAGACGCCAAGGCAGCCAAGGCCAAGCGCTCCCATTTTGGCCGCGCCGTTTCTCTGAAGAACTTCATCCTGCGAAAGGGCAAGTCCACTAGTGTGGACATGGGTGAGGGCgccaaggaggaggaagaggaggagggggccgCTGCGGAGGGAGGAGAAGCAGCGGAGGAAGGAGCGCCCGATGGCGAAGGAGTGCCCGATGGCGAAGGAGCGCCCGATGGCGAAGCCGCCGCGGTGACCGAGAACGCCAATGACAAGGACGCAGCGGAGGCCGAGAAGACGCCAGCGGCGCCGGAGACCGGAGGGGAAGCGGCTAAGGACGCGGCGGAGAAGACGCCGACGGCCGACGCTCCGGTGACCAACGGGGAGAACGGCTGCTCCAACGGCACGGGGGAGGAGAACGCCACACACAATCACCAGGACGACGATGCTGGGAAGACGATGGTGGGCGGCAGCCCGGTGAAGAAGAGCAAGGAGGCAGGGGGGGCCAAAGAGGAGGCCAACGCCAAGATCATCAACACCACGGCGGCTGTGAACAGCGACAAAAAGGCGGGAAACGTGTGAGGCCCACACAAAGAGGATTAGAACTGCCCGGGATTCGCTGAGCAAGGAGCTCTGAGCCCCGTCCCCTTCCCtaactcctcctccctccttcctccttcctccctcctccctcctcttctcccttcatccctccttcctcccgaATAAACGGAGTAATCACGTGTTAACAGAACACCATGGTGAGAAAAAGATTGAGAGTTTGAGAGAATGAGAAAGATGCAATTCATGTAGATGAGAAGTGAAAAATAAGACTTACTCAGAAAGCAATAATTCAAAGCCCTtcttttccatccatccatccatccatccttacATCCATCCCCTCCGTCcaattacatacatacatacatgcatacatacacacatgtacatccggtgttttaattttttctttgcttgtctgTGAGATTTTATATTGTCTACGagagaaaagaaatgtaaaataaagaaaagaaatgaaaatcgaGACATTCCACATTCCCTGTTTCCCATCTCCGCCGCCCTACTTTCCTCCGCGTCAAGCTACTTAACCGctcttctctgtctctaccGTCTCCTGATtggtggattaaaaaaaaaataaaaaaaataaaaaagactgtTAGTTTTATATTGATGGCCATTTTGGTTTGTAGTCCCCCCTCAACTCCCCCTTCGCCCCTCTTCTACCCAACTGTCCCCCGTAGATATCTGAcagtgcagcaggaccatgtTGCTACGGTATATAAACTGCCCTGAGGACCGCCACTTCCCAACCAACACTGCAATGTcttcagctctgtgtgtttaatgtttttagACTGTTATATTGTgtacatgaatttaaaaaagtacaaaaaaacatcaaatattaaagtcaaaatgtattttttttttctttatctgttCGGTTTggattctcttttttctttcatgtttttctgttgttgttttttttaaacacatcttCTCACTGTTACTGCAGTCTGGCAATAtgctgtaataaaaaaataaaaaaatgatggtaatattaataataataataataataataatgatgatgatgatgttttgtTGGTCCACGTTTTCACATGTCCGCTAGCAAATTGTCAAGAACAAAATAGTACAATAAAGACTAAAATCTAACAACTAAACTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21314 lncRNA upstream 51265 10004511 ~ 10004729 (+) True G15727
TU21266 lncRNA upstream 52622 9866710 ~ 10003372 (+) False LOC120551195
TU21263 lncRNA upstream 86812 9953462 ~ 9969182 (+) False LOC120551195
TU21300 lncRNA upstream 89390 9965892 ~ 9966604 (+) True G15723
TU21301 lncRNA upstream 89390 9965892 ~ 9966604 (+) False G15723
TU21725 lncRNA downstream 15669 10135508 ~ 10135731 (+) True G16031
TU21727 lncRNA downstream 19164 10139003 ~ 10166469 (+) True G16033
TU21739 lncRNA downstream 63854 10183693 ~ 10185685 (+) True G16044
TU21744 lncRNA downstream 69124 10188963 ~ 10195210 (+) True G16048
TU21806 lncRNA downstream 267833 10387672 ~ 10387988 (+) True G16101
XM_039788424.1 mRNA upstream 79492 9953552 ~ 9976502 (+) True LOC120551195
XM_039780891.1 mRNA upstream 258268 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 258268 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 403163 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 430213 9603260 ~ 9625781 (+) True LOC120547748
XM_039787317.1 mRNA downstream 239550 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 239592 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 268393 10388232 ~ 10401550 (+) True zgc:101731
XM_039785453.1 mRNA downstream 285350 10405189 ~ 10424770 (+) True LOC120548947
XM_039782658.1 mRNA downstream 314646 10434485 ~ 10445489 (+) False LOC120547173
TU21270 other upstream 52399 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 90220 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 90220 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 111549 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 171390 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 1436468 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1437613 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1440552 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1442417 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1774665 11894504 ~ 11900873 (+) True G16267

Expression Profile