RNA id: XM_039779852.1



Basic Information


Item Value
RNA id XM_039779852.1
length 1089
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120545488
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6746180 ~ 6751981 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGGTGGAGGACCTCGAGGAATTCCTCATCGCCAGAGCGGTGGCCCAGGACCATATTGATCTCATGAAGAGAGACAAGATTGACAAGGCAGTGCTTACACTGATGACCGATGAACAACTAGCGCGATACATACCAACCTACGGCGATCGACTAGctgttgtctctttttgtcATCAGCAGCGCCATACACATAACAGAGAGGCTGTCTTACAGAGGATAAAAGAGAAGATAGGGGAGAGGAAGATGTCTAAAAAACGTTGCCACCTGACATCAGAATCTCATGGATTGTCAagaaaacacagcaaaaatggaGAAAAGGGGGTACGGAAGATAGAAATTGGGTGGCTTCACTATTCAAAACCTCAGTACACCCAGGTGAGAATGAGGCATGGTGGTGGGACAAGACACACCACAGTTGATAAAGAAACTACTGTTGAACAGGTGTTGGAAACAGGAAAACGGCTGTTTTTTCCAAATGGATTGTCGACCAAGGGGCCACAACAGAATTTTGATTTTGAGGTGTGTGACTTCAAAAGGAATTCCATTTCGTTGGAAGACACTGTGGGCAAGTTGTATGAGTCAACAAAGTTGAAGCTTCTCCGTTTTTACATTTGCACGAAGGACAAATTCTCAGATCAATCCTCTGTGGAGGAGGAAAGTGAGTCCTCGACTGAAGATGGAGAAGATCTACACACAGGGAATCTGCATGCCATTGCTTCAGACCCAAGAACATCTGACTCATCCACCAACATTCCCAGTGATAGGCAAGAGGAGACCAACTCCATTATTATTGTTGATGACAGCACTTCAGAGCAGTCTTCTGATTTGGACATAGAAGTGAAGAGCCCGAGGAGAGTCAATGATTACAATGCAGCTTCTGACGCAGACACAGTAGAGTGGCGTTCAGATTATGAGCCTGCTACAGATTCAGATGATGAGTTGACAGTCCAAATTAGACCTTTGGATGTCATACAGTCAAGAGAACTACAGCCGATCGCACCAGCATCACCTGAAACCTTCCAGTCATCGTCAGCTGCCAGCTCAGAACCCACAGAGGGTTTTCGTCGAGCAACAAATCAGGTTCTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20070 lncRNA downstream 39887 6705589 ~ 6706293 (-) True G14949
TU20064 lncRNA downstream 136968 6608957 ~ 6609212 (-) True G14943
TU20061 lncRNA downstream 167719 6578238 ~ 6578461 (-) True G14940
TU20058 lncRNA downstream 179372 6566537 ~ 6566808 (-) True G14937
TU20046 lncRNA downstream 268762 6476774 ~ 6477418 (-) True G14925
XR_005637424.1 lncRNA upstream 50911 6802892 ~ 6803621 (-) True LOC120549739
TU20119 lncRNA upstream 50939 6802920 ~ 6803621 (-) False LOC120549739
TU20120 lncRNA upstream 51250 6803231 ~ 6803621 (-) False LOC120549739
TU20238 lncRNA upstream 135235 6887216 ~ 6991918 (-) False G15074
TU20241 lncRNA upstream 161752 6913733 ~ 6929575 (-) True G15075
XM_039779658.1 mRNA downstream 199163 6546091 ~ 6547017 (-) True LOC120545387
XM_039779548.1 mRNA downstream 262155 6482991 ~ 6484025 (-) True LOC120545304
XM_039779510.1 mRNA downstream 278400 6466848 ~ 6467780 (-) True LOC120545295
XM_039792160.1 mRNA downstream 303482 6441772 ~ 6442698 (-) True LOC120553580
XM_039780315.1 mRNA downstream 352969 6387490 ~ 6393211 (-) False lipt2
XM_039779893.1 mRNA upstream 27194 6779175 ~ 6780104 (-) True LOC120545506
XM_039779906.1 mRNA upstream 68166 6820147 ~ 6822230 (-) True LOC120545509
XM_039779930.1 mRNA upstream 130380 6882361 ~ 6884476 (-) True LOC120545524
XM_039777112.1 mRNA upstream 190578 6942559 ~ 6967985 (-) False arrb1
XM_039777279.1 mRNA upstream 268989 7020970 ~ 7032540 (-) False atg16l2
TU19916 other downstream 443368 6302349 ~ 6302812 (-) True G14853
TU19803 other downstream 1040203 5703387 ~ 5705977 (-) True G14754
TU19757 other downstream 1212353 5510716 ~ 5533827 (-) False G14722
TU19742 other downstream 1242750 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 1440811 5214769 ~ 5305369 (-) True G14553
TU20278 other upstream 269002 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 269002 7020983 ~ 7032467 (-) False atg16l2
XR_005638460.1 other upstream 290101 7042082 ~ 7042373 (-) True LOC120554469
TU20319 other upstream 350385 7102366 ~ 7104090 (-) True G15110
TU20324 other upstream 359718 7111699 ~ 7113608 (-) True G15114

Expression Profile