RNA id: XM_039780137.1


Basic Information

Item Value
RNA id XM_039780137.1
length 931
RNA type mRNA
GC content 0.56
exon number 9
gene id LOC120545619
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7365796 ~ 7396634 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCTCTGCCTGTCACTTTAAAGTTCCCAGATAACTTTGAGAAGTTGTCTCCTCCCATCCTCCAGTTAGATGAAGTAGAGTTTTATTACTCAGCAGATCGTCGTCTCTTCACGGGACTCTCGCTGTCTGCTGACCTCGAGTCTCGTATCTGCAtcGTGGGAGAAAACGGCGCCGGGAAAACGACTGTCCTCAAACTGCTGATGGGCGAGTTGACGCCAGTCAACGGAGTCAGACAGTCTCACAGGAACCTGAAGATCGGGTACTTCAGTCAGCACCACGTGGACCAGCTGGACCTCAACGTCTGCtcagtggagctgctgctcAACCGCTTCCCCGgcaggACGGAGGAGGAGTACCGCCACCAGCTGGGGGGTTACGGTATAACGGGGGAGTTGGCCACGCGGCCGGTAGCCAGTCTGTCTGGAGGTCAGAAGAGCCGGGTGGCCTTCGCCCAGATGACCATGCCTTGTCCGAACTTCTACATCCTGGACGAGCCGACCAATCACCTGGACATGGAGAGCATCGAGGCGCTCGCTAAAGCTCTCAACAAGTTCAAAGGCGGGGTCATCCTGGTGTCCCACGACGAGCGGCTGATCCGATTGGTCTGTAAGGAGCTGTGGGTCTGCGAGGCCGGCAGCGTGCGGCGCATCGACGGCGGCTTCGACGAGTACCGAGACATCCTGCACGAGCAGTTCAGGAAGGAAGGCTACCtgtaagccccgccccctctctctggcagcagccaatcagccgGCCGGATGATGAACTGTCCCGCCTGCTGCCAGCCGATTGGTTGAGGCGGAGCCGTCAGAAACCATGTGGACTTTATTTAAAAGTTTCTCTTCATGTCAAACCGGATTTTGTTTTGTATCAGATTTAAATCTTCACCTTCAGACACAGAGCCAATAAAAACATCCGATCCTGTCTTCA

Function

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20381 lncRNA upstream 4587 7326575 ~ 7361209 (+) True G15156
TU20388 lncRNA upstream 9239 7354998 ~ 7356557 (+) True G15162
TU20362 lncRNA upstream 36577 7309629 ~ 7329219 (+) False G15144
TU20380 lncRNA upstream 42078 7323253 ~ 7323718 (+) True G15155
TU20366 lncRNA upstream 51003 7309629 ~ 7314793 (+) True G15144
TU20404 lncRNA downstream 4131 7400765 ~ 7402776 (+) True G15174
TU20411 lncRNA downstream 28806 7425440 ~ 7459538 (+) True G15179
TU20412 lncRNA downstream 28806 7425440 ~ 7450207 (+) False G15179
TU20490 lncRNA downstream 98426 7495060 ~ 7541926 (+) True G15236
TU20529 lncRNA downstream 270508 7667142 ~ 7745991 (+) True G15243
XM_039777245.1 mRNA upstream 424362 6935046 ~ 6941434 (+) True or55e1
XM_039776759.1 mRNA upstream 436211 6913684 ~ 6929585 (+) True LOC120543617
XM_039780036.1 mRNA upstream 454306 6910543 ~ 6911490 (+) True LOC120545568
XM_039779950.1 mRNA upstream 466214 6898638 ~ 6899582 (+) True LOC120545541
XM_039779942.1 mRNA upstream 471299 6893550 ~ 6894497 (+) True LOC120545533
XM_039777404.1 mRNA downstream 34309 7430943 ~ 7440995 (+) False LOC120543955
XM_039777395.1 mRNA downstream 34369 7431003 ~ 7440997 (+) True LOC120543955
XM_039776913.1 mRNA downstream 138465 7535099 ~ 7570718 (+) True ece2b
XM_039776922.1 mRNA downstream 154131 7550765 ~ 7570718 (+) False ece2b
XM_039776845.1 mRNA downstream 177090 7573724 ~ 7603726 (+) False ano7
TU20165 other upstream 376400 6972845 ~ 6989396 (+) True G15019
TU19929 other upstream 949726 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 950252 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 950252 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 952421 6408043 ~ 6413375 (+) False spcs2
TU20402 other downstream 1467 7398101 ~ 7399141 (+) True G15173
unassigned_transcript_83 other downstream 15196 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 94731 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 429976 7826610 ~ 7827290 (+) False LOC120543808
TU20559 other downstream 436689 7833323 ~ 7843657 (+) False rffl

Expression Profile