RNA id: XM_039780780.1


Basic Information

Item Value
RNA id XM_039780780.1
length 4074
RNA type mRNA
GC content 0.48
exon number 10
gene id rinl
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19515263 ~ 19525581 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCAACATTTGCCGCTAGCATTGCTCAAAACTACAGTGATAAAAGTGTGCTTGCCTTCAGCTCCTAGTTGCTAAGAATTGTCTTCCAATATTAAGATATCTTTAAAAAGCAGAGATCTATTAAAACATTGAATTGGTGCAAGTTGGTCATCACCTTCATACAGATTGTGTTGAGATTGTGTTGGCAGGAAAGGGTTGGAACAAAAAGCGTGACCGCGCTGTAAAAGTATTCTTGCCACGGAAATGTGGACCAATAAACAACACCTCTGTATGCGGTTTCTGTGAAATGCTGGAGTGTTGGACAGCCAGCAAACCAACCTGCGTGTATGTGATATAAAAACAACACGAAACCCCCATTCTGTCTCTCTCAACTATATTTTTAGTATATTAACCTCTATGACTGATGTATTCATCTGTGTGTACATTTCTCCCACAGctgcaagataaaaaaaatctaacacttTAAGAACACAGATAATCTCATAGTTGTGTTGAAGTATTTTCAGAAGCATTATCTTTTCTCATCCATTCATCATCTCTGAGCAGAAAACACAGACAGtgctaaaagagagagagaaaaataagcaTTTGTAGCTCTTTAGAGAACATGCAGTGTCTTTTTACTGCGCACAGAGCTGGGTTAACCACATGCAGACTTTGAGGGGAGGGGACGGCGAAGAAGGTGCAGTGATGAAAATTGAAAGTGTATTAAATTCCAGCATGTACAGGAGACAGAAGAACGTGGCAGCTGTTACGACATTCTGCACATTACAGCAGAAAACTTCTTAAGGATGTGTTTCTGAGTGTGAGCTTCCTATTTTAGCCCTGTTGGCGTTTTGAGCTCTTAAGCAACATCTTGCAGAAAAGAAAAGTTCAAGAGAGAGACAATTGCAACATGCGGAGAAATTTGCCAATAGTATAGAGGAGAAAAACAGCCTAACACATGTAAGTATCAGCCATTTTCATACCACAATAAGCTCGTAGAGTGTCTGACTATTGAAAGTGAATGCTCAAAAAGCCAAATCTTTCATGAAACTCAACACTTTATTGTAATTTTAACCTTGATTTTGTCTCAATCTTTGAGCATGAAGAAAGTAGTCTTAATTTATTTTGTGAAAGTTGTCTACATGTGACTGACATACTGATGTCTTGTTTATTTTCATGGATGCAGACGATTGTACATGCACATAGACGTGTCCATATGTGCGCGTCCAGGGCAATTCACAGTCCAGTTAATGGGACGACAGCCATCCcatggaggagcagcaggaagaGACTGTCGCTGCTAGAGCAGCTGAGGGGCTGTCAGGAGGCCTGGTGCCCCAGGGCCCCCTGGGATAGAGAGGAGGCCCACGCTGCTATCTGTGGAACACCTGCTGGGAGTTTCCTGGTTGTGCGAGACTCTGCGACCTCTCAGCCcagcctgctgtgtgtgtcagCTGGAGGAGAACATGAAGCAGTTGTTGATTATAATATCACAAGCACAGGCACAGTCTTCCAGCTGTCTGACTCTcgtctgtctttctctgacTTGGCTCAGCTCGTGCTCTTCTACTCTCTTACCAGGGATGTTTTGGCTGTCTGTCTTTTCATTCCTCGCTGGATCTACAGTGTAACCGAGAGGTCCAAAGATAATCTTGCTCAACTTGAACCCAATACTTGGCTCTTCACCCCGCCTGGCCAACACACAACAGATGAAATGAACCAGAGGGAGCCAAGCAACGTAGTGTGCTCCATACAGCTGACATCCACCAATGGGGCGCTGTGTATCATCAATCCTCTCTACCTTCATGAACATGGAGATGACTGGCTGACCCACAGGGCGAGCGCTGTGCAGCGCACCACACAGCCATCAAATTACAGAGGAGAGCGACGCCTCAGCACCACCAGAACATGGGCAGGGGCGGGATTACAAAGTAAACGAGCCATCTCTTTGGACCAGGAACCCTCCAGTGTGGAGAGTTCTGGTCTAATGAGAGCCAAGTCAGCGGATTTACCACGTTGCCCCACAACCCCGTCAACACCAGCTGCTCCAGCAGGGGTGGTTCTCAGGAGACCCAGCAGAGATTCTGCCTCCAGCCCTCCTTACAGAGCGAGCACTGGCAGCCTTTCTTTATTTACTCCATCCAACTCTGAAAGTAAAAATTGTGGAGCGTTTGAGCCGCAGCAACATGGCAGCCCAGTGCCTCAGTCTCCTTACAGGGTGTCCTGGATCGAAGATGGAGTCTGGCTGCCCCCGCCCAGGCCTTCCTCTTTGCTCCACCCCCCATCGCTGGAGCTCGACTCGCTGTCCATCAGCAGCATAGAGGAAGAGCAGGAGCCCCAAACGTCCAACCCTACCCCGCACCACCCTTCTGCGCACCGGTTGGCTGACAAAGTCATCCATCGTCTCTCAGCGGTGGGTCAAGCTCTCGGTGGGCTGGTAAGTCCGAGGAAGAGACTAATCAATCGTGTGCTGGAGCTGAGTGAGCGGAAAGGCGCAGCGTTTGCGGAGGCTGTAAAAGGATTTGTGGAGATGACGTTGAAGAAAGGGGCTGATCCCGAAGGGGTCACAGGGTCAGAGTTCTTACAGGAAGTCAGGTCATCGCTCTCGTCACTGAGGGAGACACTGTTGGACTATCCAGAAATCCAGGCAACGTTGGACAGCATCACTGACATAAATGACTCAGAGATCGACTCCCTTGTAGAGCTTTCCCTCCACAAGGTGGCTCTGAAGCCCGTCTCCGCACACCTCTACTCCTGCATTCATGTTTCCCGGACTAATGACGGCAGCTTCAAGCGTCTGCAAAGCAATCTGCACGTGCTGGAAAAAAACGGGGTAGAGCAGTTAGGGGGATCGGCGGGAGTTGGAGTTCCCGACTCTTTGACCCTGGAGCGGATCCAGCAGCGGTGGACTAGTATGCATGAGGCTTACTCCCCAAACAAGAAGGTCCAGATCCTGCTCAAAGTCTGCAAGAGCATCTATCACAGCATGAGTGCTAATGCTAGCTCAGGTACAGCATTTGGAGCAGATGATTTCCTGCCCTGCCTGACATGGGTGCTGCTCCGTAGTGACGTGGTCACCTTACACCTGGACACAGACTACATGATGGAGCTGCTGGACCCCACACAGCTACAGGGAGAGGGTGGCTACTATCTTACAACTCTATACGCCTCTCTGTACTACATCAGCAGCTTCCGGCCACGATTGGCTGCTCGTCAGCTCAGTGTCGAAGCCCAACAGTCTCTTAACCAATGGCATCGCAGGCGTACCCTGCACTGCAACCAATCACGGCGCAGCAAGAACCGACGGACCATTCGCAGGCAGGCATATCGGGAGAGGGGCGCGCAGAGCTCTGAGACAGAAActgaggagaaagagaaaagtggGAAAGATTGTGATTCTGTTAGTAATGACGAgtcacagcagcagagagaaagcCCTGCAGAAGCTCTGCAGCCGCTGAAGGAAGACACGAGCAGTGGAAGAGAAGTTGAGGACGAATCACAGATACCCTCTCAAGCGTCAGACTGTAGTCAGCAAGACGTAACAGGAAGCTAGACTCTATGTGCAGCAGGAGAAGATGATCACAGAGGATTGTAATAGAGAAAAGACGAAGAATGGCCCTTACAGTAATGCAAAGAATGGCCACACATTTTTTGGTCTATATCCaccacgttccacttccgggactgCTCCGTTCCGGCCGGAAATTTCAttggatgtccttcttttcggccggatgtccattaccttctgctttctttgtgttggcattttaaacttgatttatgaggactatggttaactgctcctcagatctctgcatggtaaatccaTCTGTGCAATCtgaattttctgttgcatgactaaagtGTGTGCTCCGTGCCGTAACCGTCGGATGGGccatcggccttcattttggccgattttaCATGTTGAAttcggagggcgggcagtcggactcaatgaccaatctgattggtggagttttaaaccttgactagcgaatcagtgcacttaTGTTAGCATGACGAACGgatctcaaaatctgatgaaaatctttcaaactttgtcgataaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24780 lncRNA downstream 109902 19383403 ~ 19405361 (-) True G18127
TU24614 lncRNA downstream 280806 19230919 ~ 19234457 (-) True G18002
TU24596 lncRNA downstream 360012 19154962 ~ 19155251 (-) True G17986
TU24573 lncRNA downstream 765862 18749198 ~ 18749401 (-) True G17964
TU24537 lncRNA downstream 921590 18592975 ~ 18593673 (-) True G17936
XR_005641638.1 lncRNA upstream 12794 19538375 ~ 19541130 (-) True LOC120573122
TU24852 lncRNA upstream 99822 19625403 ~ 19628640 (-) True G18179
TU24860 lncRNA upstream 123635 19649216 ~ 19649652 (-) True G18184
TU24875 lncRNA upstream 175647 19701228 ~ 19717285 (-) False fbxo46
XR_005637280.1 lncRNA upstream 229306 19754887 ~ 19755993 (-) True LOC120548779
XM_039785114.1 mRNA downstream 47355 19466663 ~ 19467908 (-) True LOC120548698
XM_039782929.1 mRNA downstream 75123 19438240 ~ 19440140 (-) True her8.2
XM_039782931.1 mRNA downstream 75353 19438240 ~ 19439910 (-) False her8.2
XM_039792615.1 mRNA downstream 80968 19431359 ~ 19434295 (-) True her13
XM_039782243.1 mRNA downstream 257441 19252336 ~ 19257822 (-) True mrps22
XM_039780828.1 mRNA upstream 140 19525721 ~ 19532651 (-) False sirt2
XM_039780820.1 mRNA upstream 140 19525721 ~ 19532651 (-) True sirt2
XM_039780839.1 mRNA upstream 7529 19533110 ~ 19536541 (-) False dmac2
XM_039780848.1 mRNA upstream 7529 19533110 ~ 19536356 (-) True dmac2
XM_039784649.1 mRNA upstream 38637 19564218 ~ 19595131 (-) True LOC120548388
TU24394 other downstream 1292409 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1363295 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2036419 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 2584269 16848161 ~ 16930994 (-) True G17597
XR_005637172.1 other downstream 3454855 16049872 ~ 16060408 (-) False sdhdb
XR_005637451.1 other upstream 277132 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 611761 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1568601 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1721258 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 2138514 21664095 ~ 21671479 (-) False gdpd5b

Expression Profile