RNA id: XM_039780820.1


Basic Information

Item Value
RNA id XM_039780820.1
length 2398
RNA type mRNA
GC content 0.43
exon number 16
gene id sirt2
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19525721 ~ 19532651 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGGACCGTGTTTCCGAcggacaacaacaaaacggtCCAGCTGAGTGccaatatatatgtcaatggtgccAACTGTGTAGTGAATATTGGTCGTAACTTAATAAAGTTGGggatttaaatacattttctttcggACCCTTGTGGTTGAAGGGTCTCAGTAGACGGTTAAATGTCTGATGCATCAGAACTtcctaaaaaagaagaaaaggaggaggaggttacACCTGAACCAGAGGAGGAATCGGACGACAGCAGTGGGGAAGAGGCTACAGGAGACACAGAGATGGACTTCCTGCGGAACCTCTTCTCCAGCACCCTTGGTCTCGGCTCGGCAGACAAAGTTCTGGATGAGCTGACTCTGGACGCAGTGGCACGATACATAAAGAGCGGAAAATGTAAAAACATCATCTGCATGGTTGGAGCAGGAATATCCACATCTGCTGGGATCCCTGATTTCCGTTCACCAGGAACTGGCCTGTATGCAAACCTGCAAAAATATGATCTGCCTTACCCAGAGGCCATCTTCCAGATAGATTACTTTAAGAAACATCCAGAACCTTTCTTCGCCTTGGCCAAGGAGCTTTACCCAGGACAGTTTAAGCCGACAATCTGTCACTACTTCATGAAGCTGCTGAAGGACAAGGGACACCTGAGACGCTGCTACACACAGAACATTGACACCCTGGAGCGTGTGGCCGGGCTCGAGGGAGAGGATCTAATTGAAGCTCATGGAACGTTCTACACGTCTCACTGTGTCAGCTTCTGTTGCCGCAAGGAGTATAACCTGGACTGGATGAAAGATAAAATATTTTCTGATGACATTCCCCGATGTGACAAGTGCAAAAGTTTGGTGAAGCCAGATATCGTTTTCTTTGGAGAGAATCTACCTGTCCGGTTCTTCACTTCAATGAAGATGGACTTTCCCTGCTGCGATCTTCTCATCGTCATGGGGACGTCCCTGCAGGTCCAACCGTTTGCAGGTCTAGTCGGCAGGGTTTCAAAAAGTTGCCCCAGACTGCTTATTAATATGGAGAAGGCAGGGCAGGCTGATCCTCTGTTTGGGTTGTTGGGTTTTGGAGGAGGAATGGACTTTGACTCAGACAAGGCATACAGAGATGTAGCTCACATCAGTACATGTGATGAGGGCTGTTTGGCTCTAGCTGAGCTGTTGGGATGGAAGGAGGAGCTTGAAGAGTTGGTGAAGCAGGAGCATGCCAGGATTGACAGTCAGGACAAGAAAGAGAAGGCCAGTGGGAGCAAAGGAGCAGCAGCCAAGGCCAGCTCTGCATCAGTAGCACCAGAGCCAGAAAAGGAAGAGTAACTTATTAAAAAGCTCCTTTTCTAAAGAAACGCTAATGTAGTGATGTTATTGTTTGGAGTTGGCCCTTAAAGGGAGATGATGATACCAGGGTTTTTGCTTGGAAGTGAAGCTTCGACGGCTGCGGACATTTAATTCTCCTAAACAATCTCACAGGTTATGCTTCTGCTCATTTGCACTTTACTGATATTAATCTACTTTGctaatttgttttttcattaGCTTACATCTTTCTCAGCTGTATATTTATTTCTGAGGAAGTTAACTGGGCAGAGTTCTTCAAGGATGTTTACAGATCTCACAGAGCTTGGGAGGTGGTAAATATCTCTTAAACCCCGGCAGTGTGATTATGAGTTTGCTGAATTATAGAACAAGCTACTATATTGTCTCCAAACCGAATGATGAACACATCTGATTGTGTGATTTGGGCCAAGCCACTTCAACTCTCTTCACTTCTTTGAGTTGTTGATTTCAGTTTAAGCTTCCTCAAAAGATAACCAGGCTATTGTATATTGCCCCCCAAGCCGAAAtctgttggtctgattggtcaTTGACCTCTTCAAGGTATCACATTTAGCACAAATTGAATTTCCTGATAGGAGAGCTAAGGTAGTTGTTAAATGTAACAGTAGGATAGTTTGTTAATTTgaacttttaaaacatttaaaattaacACCGTTTTTCACGTTAACCTTCTGCTCCTGTTGGCTTTTAACGGTGTTTATGAGGCAAGTTGTATTTTATTAATCTTATGGAACAACAAACTGTACATGGTGCACAACATAACAGTAACTTTGCACACTCCACAGGCAGGACCATAGTTGATTTTGCTGTTTAATTCATTTTGGATAGTCAAAGTGCTGAAGAAACACAAGAAGGTTAAACTGACAAGAATTCTAAAATAAGGTGTAATTCGGTTCAAGAAGTAGTTTTTAATAGGATACTTTTGGGTTATCTAAAATAGCATGAATTGTTGCATCATGAAATACAGGGGGTGGACACGGTTACATTATCATCTATACCAAATAATGGAAACCAATACAAAAATTCTGCAATAAATTTGACCTTTGTGAAGCTGA

Function

GO:

id name namespace
GO:0006476 protein deacetylation biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11412 SIRT2, SIR2L2; NAD+-dependent protein deacetylase sirtuin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24780 lncRNA downstream 120360 19383403 ~ 19405361 (-) True G18127
TU24614 lncRNA downstream 291264 19230919 ~ 19234457 (-) True G18002
TU24596 lncRNA downstream 370470 19154962 ~ 19155251 (-) True G17986
TU24573 lncRNA downstream 776320 18749198 ~ 18749401 (-) True G17964
TU24537 lncRNA downstream 932048 18592975 ~ 18593673 (-) True G17936
XR_005641638.1 lncRNA upstream 5724 19538375 ~ 19541130 (-) True LOC120573122
TU24852 lncRNA upstream 92752 19625403 ~ 19628640 (-) True G18179
TU24860 lncRNA upstream 116565 19649216 ~ 19649652 (-) True G18184
TU24875 lncRNA upstream 168577 19701228 ~ 19717285 (-) False fbxo46
XR_005637280.1 lncRNA upstream 222236 19754887 ~ 19755993 (-) True LOC120548779
XM_039780796.1 mRNA downstream 140 19515263 ~ 19525581 (-) False rinl
XM_039780786.1 mRNA downstream 140 19515263 ~ 19525581 (-) False rinl
XM_039780780.1 mRNA downstream 140 19515263 ~ 19525581 (-) True rinl
XM_039780808.1 mRNA downstream 2417 19515263 ~ 19523304 (-) False rinl
XM_039780802.1 mRNA downstream 2998 19515263 ~ 19522723 (-) False rinl
XM_039780839.1 mRNA upstream 459 19533110 ~ 19536541 (-) False dmac2
XM_039780848.1 mRNA upstream 459 19533110 ~ 19536356 (-) True dmac2
XM_039784649.1 mRNA upstream 31567 19564218 ~ 19595131 (-) True LOC120548388
XM_039823287.1 mRNA upstream 65499 19598150 ~ 19609021 (-) False nop53
XM_039823281.1 mRNA upstream 65499 19598150 ~ 19609021 (-) True nop53
TU24394 other downstream 1302867 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1373753 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2046877 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 2594727 16848161 ~ 16930994 (-) True G17597
XR_005637172.1 other downstream 3465313 16049872 ~ 16060408 (-) False sdhdb
XR_005637451.1 other upstream 270062 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 604691 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1561531 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1714188 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 2131444 21664095 ~ 21671479 (-) False gdpd5b

Expression Profile