RNA id: XM_039780872.1


Basic Information

Item Value
RNA id XM_039780872.1
length 2620
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120546095
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23159296 ~ 23162078 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTATACCGAAAACCATCTACAAGCTCTGACAGACTGAATAACGTTTGCTTTTGTTTCATGCACATGTTTTACTTGATTTGTTCTTTCTTCTAAAGTGTCTAAAGTCTCTTTGGAGACAGAAAATACTGACTTATAGGTCTGAGTTCTTTTAGAGGGCTGAAATGGACAAAATGTGAAAACGCTCTTTGTCTTACTTCATAACTTTAGTCTATATAGGGATATTGTGCAAGAgagtgtgtgcgcgcgcatgtgtgtgagtgtgtaaggTGAAAGGAGTATAGAGGGTATTTAAACACACTTAAAAGCAGAACAGCTCTATTACTTCCAGCAAGCAGTGTGGGTGCAACAGTCCTTTGAAACCCTTTAAGCAGCCATGGGTGACATCTCGGACAATGAATCTATCTCTAATATAGCCAATACAACTGACTATTACGATTATGACATCCTGTTTCCTGAAATTTTGACCCCTGAAATTCAACCGATCCAGATCGCGGCTCTGGTCTTCTACGGCCTTGTGGTCCTGCTGGGTGTCCCCGGAAACGCTCTGGTGGTGTGGGTGACAGGGTTCTGCATGCCGCGCACTGCCACCTCCCTCTGGTTCCTGAACCTCGCGCTGGCTGATCTTCTGTGCTGCCTCTCCATCCCTCTGCTCATGGTCCCTATAGCCCACGATGACCACTGGCACTTCGGCTCGCTGGCCTGCACATTAATCAAAAGCCTGTTTTACCTGGTGATGTACTGCAGTGTCCTGCAGCTGGTTTTGATCAGTGTGGATCGCTGGATGCTGGTCAGCAGACCCGTCTGGTGTCAGAACAACAGGCGACCTAAGCGggctgtctgcgtgtgtgttgcTGTCTGGTGCCTGGCCCTGATAGGCAGCATTCCCCAGTTTTATTACACCAAGGAGATCaaagcaggtgaaaacaagcgAGAGTGCCTGACAGTACACACTACAAAACACGGTGCCTGGCTCTTCATATCCATCCGCTTCCTGCTGGGATTCTTCCTCCCTTTCCTGGTGATTGTAGTGAGTCACGTGGTGGTGTACAGGAGAGCAGAGAGCGGGCTGACCCGTGCTCGGACCCGCTCCAAGCGCACCCTGAGGGTCATCCTCGCTGTGGTGATGAGCTTTTTCCTCTGCTGGCTCCCACTACACATTGTGGACTTTCTCACATTGACGGTCTCTCGGTCATCCATTCACAGCCCAAACATTTACCTGGCACAGGTTTTAACACTCTGTCTGGCGTATTTCAACAGTTGCCTGAACCCGCTGCTCTACGTGTGTCTGGGCCGGGGCTTCAAAGACAGCATGAACCGCTCACTGCGCGGCATGCTCCAGTTCATCAGCGAGGACCCCACGACCAAGATGAGCATCACTAATAACGACACCAAGAGCTCGAGCAACGGGAAGGAGACAACTAAAATCTGATGTTGTATTGAGTTTGATATAGTGTGTAGTAGCCTACGTTTGTAGTAGCCTAGTAGTTTGGTGTCTACTGTGTATGCtgttcttttaaaaatgttggaTCTCCATAGGTAGGATATAGTTTAACAAGGGCCACCCCTTCTCTACTCACTGCATTGCAACTGGGAATCCTAACCATTGGGTTTCACCATAAACTACCTGTGTTaagaattaattttttttttgacacactgGTCAAATAAGCTGAAGAAAAACTTCAATATTTGAAAGTGTGAACAGCAACCTCTGCTGTATATTTTGATAAGGATTTTTGCTTATGCAACTGAACAACATATGCAAAGATGTAATCCTGACTGCCTCAGGAATGAAAATCaggaactgttttttttattatttgccaaTCAGCAAAATTTCCTGTAAACTTGTCTAATGCTGTTGCAACTGCTCCCACTTCTGTTTTTTGCTCCTACACAAGGATGATCTCAGACTGTTTATAGTCATATTGTCATTAATAGGAATGTAGAAATGGCCTGAGTCTCTATAACTCTTAGTTGTAATTCAAGTTTGTTGtcagaaatataattttctatTAATAAATAAGAATGTATTCTTGTTATTCCTGTAAGACACAGCTACGTCCTCTTGTGTAACAGTACTATGCATAGACCACAGGAGGGAGCTACACTCTAAATCGCTTATATTCAGTGGCCAAGGTGCAGATGCATGTAGCTTCTGGCCTGAGACCCATTGTTTTAGTGTGTCAGACCctaaagacaaaaaagagacaATTTAGGGATGTTTGTAAGTTGGTCAAATACATTCAGTTCAAACAAATGCCCCTCTTTGCATGTCTACAGAAGTCTATATGTAAATTCATTAGCATTTTTTACTACTTGCCTAATGCATATTTATGATGTTTTAGATGGATCTTGTTGTACCAGGTCGATTTAAgattaaacaaaacaataacaatgtACCAAAATTAGGAGCAAAATCGCTTTTATTTACAAACTACATTCATTCCAAACAAGGCCACATTATGATATATACAAAAGCATACATATTTACAAGAGTGTCCAAGTCTGAGTCCCTATGTTTCATGAATCTGTGCACTTGTACATAATGTATGTGCATGCATATATGTACACTGGTACCTCACTATGGCCTCTAATAAACCCATTCCTGACTCACA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0050679 positive regulation of epithelial cell proliferation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25824 lncRNA downstream 2792 23155941 ~ 23156504 (-) True G18896
TU25810 lncRNA downstream 21037 23137650 ~ 23138259 (-) True G18883
TU25794 lncRNA downstream 38362 23044749 ~ 23120934 (-) True G18868
TU25755 lncRNA downstream 343316 22815781 ~ 22815980 (-) True G18841
XR_005641431.1 lncRNA downstream 363657 22794426 ~ 22795639 (-) True LOC120572359
TU25836 lncRNA upstream 13386 23175464 ~ 23175714 (-) True G18905
TU25842 lncRNA upstream 16558 23178636 ~ 23180583 (-) True G18911
TU25856 lncRNA upstream 33590 23195668 ~ 23196344 (-) True G18923
XR_005636957.1 lncRNA upstream 54688 23216766 ~ 23234546 (-) True LOC120546850
TU25884 lncRNA upstream 71435 23233513 ~ 23236846 (-) True G18943
XM_039790989.1 mRNA downstream 276843 22875065 ~ 22882453 (-) True rbm7
XM_039821365.1 mRNA downstream 287706 22860951 ~ 22871590 (-) True barx2
XM_039788880.1 mRNA downstream 360284 22789044 ~ 22799012 (-) True LOC120551448
XM_039821718.1 mRNA downstream 806714 22347311 ~ 22352582 (-) True smtla
XM_039790276.1 mRNA downstream 931807 22200393 ~ 22227489 (-) False fli1
XM_039780884.1 mRNA upstream 124 23162202 ~ 23169207 (-) True lbhl
XM_039782027.1 mRNA upstream 116524 23278602 ~ 23283802 (-) True cfap45
XM_039782018.1 mRNA upstream 116525 23278603 ~ 23283179 (-) False cfap45
XM_039782060.1 mRNA upstream 127318 23289396 ~ 23291463 (-) True trappc4
XM_039779525.1 mRNA upstream 152980 23315058 ~ 23341092 (-) True sacs
TU25812 other downstream 10781 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 10781 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1152125 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1487817 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 1897373 21246839 ~ 21261923 (-) False slc6a4a
TU25890 other upstream 84525 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 567410 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 661743 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 1085953 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 3144986 26307064 ~ 26334719 (-) False LOC120570356

Expression Profile