RNA id: XM_039780979.1


Basic Information

Item Value
RNA id XM_039780979.1
length 4320
RNA type mRNA
GC content 0.46
exon number 21
gene id rap1gap2a
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21295349 ~ 21405528 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTACCTGTTCAGGCTTTAGGCGTTAAAAGATAAAATACAGATTAAAAGCGAGTGATAGGGAAGTCCCTTTCCAAAGGTAGAAGGGTAGTAAAAAGAAGAAGTAGGCAGAGACATCAGAGGGCTCAGATGTTTTACCAGCTAAGTCTGCAGAGTTCTTCGATATGCTGGAGAGGATGCAGGATGACTATATCCCCTACCCACGAATAGAAGATATACTGGAGAAAGGTGGTCCATACCCTCAGGTAATCCTGCCACAGTTTGGGGGTTACTGGATTGAGGATGTGGAGGCACCAGCAGGGACCCCctcctcctcagagtccagtTTCTGTGAGGAGGAGGACGGAGGAGAGGGCATGAGCCCTGGTGGGGGACACAGCTACCGCCTGGAGTGTAATAGCACTGCCCGCGCCTACCGCAAATATTTCATAGGCaatGAACACATGAACTATTACTGCACAGGCAGCAGCATAGGCAACCTCATCATGTCTCTGAAACACGAAGAGGCTGAGGGACAGGAGTTCCTACGCATCATGCTCAGGTCGAGGATCAAAACAGTCCATGACAGGATCTCATTAGCGGGCATCAACCAGCTGCCTAGTGTACCCCAGATTGCCAAGCTTCTGTGTGACGATGCCACAGGGCTGAAGTTCAACCCGGTCCTGTACCCTCGGGGATCCCAGTTGATAGTGGCTTATGATGAACACGAGGTGAACAACACTTTCAAATTTGGAGTCGTATACCAGAAGTTTGGACAGACATCAGAGGAAGAGTTGTTTGGGAATAATGAGGAGACGCCAGCTTTCAAGGAGTTTCTCAGTACCCTGGGTGAAAATATGGAACTTCAAGACTTTAAAGGGTTCCGCGGTGGGCTGGATGTATCCCACGGACAGACAGGGTCTGAATCTGTCTACACTGTCTTCAGGCAGAGAGAGATTATGTTCCATGTGTCAACCAAGCTTCCCTTTACTGAAGGAGACGTCCAGCAGCTCCAGAGGAAAAGACACATAGGAAACGACATCGTGGCCACCGTCTTCCAGGAAGAGCCCACACCATTTGTTCCAGACATGATCGCATCCAATTTCCTGCATGCTTACGTGCTGGTGCAGGTTGAGAACCCCTGTACagaacacacaacatacaagGTGTCAGTTACAGCGAGGGAGGATGTGCCTTCTTTTGGACCCCCTCTACCGAACCCAGCTGTCTTTAGGAAGggTCCTGAGTTTCGAGACTTCCTGCTGACAAAGTTGATCAATGCTGAAAATGCCTGCTACAAATCCGACAAATTTGCCAAACTAGAGGGGCGAACGCGAGCTGCGCTGCTGGACAACCTGCACGACGAGTTGCATAGACAGAGCCAGGCCACGCTGGGTCTGGGCCAGGCGGGAGAGGAGGACAAGCTGGAGAACGGGGGACACGGGGGTCTGCTAGAGTCCTTCAAGAGAGCCATGCGTGTCAGGAGCCACTCCATGGAGACCATGGTGGGGTCCCACCGTCACAGGAGCCCCGGGGTAGGAGGTGGGGTGCCCGCCAGCGTGAGTGGAGGAGGGCTACCACAAAGCACCAGCGAATGCACAAAGAGCACCTTCACTCCTCCTGTGTTGTCAGCCAAGTCTCCTCTGAAGAGCCCAGTGAAACGTCGCTCAGGCCTCTTCCCTCGTCTCCACTCCAGCACAGAATCCCCAtcggacaaacacacacgcagTGAACAAAAGCCTGCAGATATTTACCAGCTGTCCCAGGAAGTGAGGTCAGAGACATTATCCAATCCCAGCTCACCTGAGATCTGCCCCAACAAAGAGAGGCCGTTCATCAAGCTGAAAGAGTGCGGCAGTGGCAGGCCAAACATCTCTCGTTCTTCATCCAGCACCAGCAGCTTCAGCAGCACCACGGGAGAAACAGAAGCTCTGGAAGAACTGGAGACAGCCGGCCATCCCTCTATAGCGTCCTCTTCTGCCTTTAGTCCTTCCCTCAGTGTCGACAGCCAGGGATCAGGTACCCCTGTCATCATGTGCCGTAGTCCAACAGATGTGAAAAGTAAGACATCACCGAGGTCAAATTTGAAGTTCCGCTTTGACAAAATGAGCCACTCATCCACAACTTCCGAGTAGCTTTGTGGAATGGAAATATCAGACTTGCACAACAAAGGGACTGCACAGGTTGACGGAGCTGCAAAAAGAAAGATGACAACAACCACAACCACAAAATAACCATAGAACCACTTCCCGATGCCAAGGATAATCTGACAAGATGACATAGTGCACCAGAGTCCCCACACACTATAACCTAACTGACAATACTGTGAGCGTATTATTGAAGTGAAGCAGCTGACATGTTGGCATTCTTTTCAACCAACcttaggctacagaaattagtCAATACTTTGCTGTTGTTACAAGTTGCTGCATCTCAGTTGTTAAATGTTCACATCACATGAAGTCCTAGCATGGCTGTAATACTGTGAGTGCAGGCTGAGCTAGACTCTGCCTCAGCTTTTTGTAAAGCATCTAGTTTATTAGAGAGATACAGTGATCTAGAAGAATGGTAACATGAGACTATGGCCGAACTGTTACTCGTTATCTGTTCGACTGCTGAGTGGTCAGTGGAATTGGAAATGTCAGACATCAGGATGTTCCCTTTTTGCCTTTGCCCTTGAATGGTACGTCTGGCAGCAGTTCCTCTTTTGcctaaaaaaaaacgtatgcaggcaaacacagacatgcacagaaACATAATGTAGACTTACAGTAGCAGCCTTTTGGAGATGATAACACGGGGAGTCTCAATTCTCTACTGTACGATCTGAGCTTGTTCTTTGCATATAAAAATGCTTTTCTAGGAAACACCTTTGATTTTCGAGATGCTTTTGTAACCTTGCTAGCTGCTGCATTGTGTCTACTGCACTATTAACTCGACATTGCTGAAACTCAGTCGAAATACCTATGACAGCATTTCTGTACCTGTAAGGGTAACTTCAAATCCCTGAACTCTAGTGCTTGGTTAATGGAAATTAGCTCATATGGAGCACAGTAGGAGACACTGCCGACACATTTTGCCATGCGCTTATTTTAGCCAAAGCCGCGCCTTACAATCTATCAAAAGCCCTTTTCATCACTGATGCTCTCtgtcgctgtctctctctctctctctctctctctctctctctctctttttttctctctctctctctttctctctctgtctgtctcactatGTGAGAGGACAAGAATCTTCTGGATCCGCTTACAGCACAGTCGTGGGTAGCCGATTAACACCCACATATACTGAAAATAGACGATGCACCGATGAAAACATTTCACCTTCTGATACCTCCCATTGAAGCTTGCTAGCTCGGTGTATCTGTGGCTATGTTTGTTGGAACTTTTGAACAGGAGAGTATCCTGGGTTTAAAGCTTCCCAGCATGTGCGCTGATAATAATGACTTGAAAAAAAGATGCTTCAGGTTAAATGAACCTTTGAACCACACATTGAATgtgaactctttttttttggtaattTTGATTTGACACTTTGTTAGTTGTTATTACAAAGTCTCTTAAAAGTAAATTGCAAAGCCAGGTGCTTACAAGCACAACAGGACAATAGGTCTACTAGTCCTCAACTCTATCATAACATTAGCCTGGAGCTGCCTAAACTAGAACAGGGGAAGGTGTGAGTGTGTTAAtcaagaaaaagcttaaagacacccagatgtgtttcctgtgtgaccAAACAACCAAGCATGTAGGTCTTTTAAAGAATGCATATGTGCTCTTACTGTAGAGACAACCATTCCTGGATGGCGGGATAGTGTGTGAAGTTCTGTCACATGAAACTCAAATCCTAGAgagtcagttcacccaaattacaaacaCATATGTTGTAATTTGggtgacttttttatttttgcaagaAAGCTGTAGAAAAGCTGAAAgaaagttcagattttttgactTTAAGGAACAGCTTGTTGACTGATACACACTGTGCTCAGTTAGGCCAGTGATTACCTTGAACAAGGGAAGCAGGGACAGAAATCACACAAAAACAGGAAGTTGAGATGTACTTTTGTTTGTAGCAGGTATCGCCTAATGCTCTGCAGCCTTTCCTCTGTTAATATGCTTAATTTATTCAAATGAAAACTTATTTTGCCTTGATGTCATGTACAAATGTAACTGCAGAGTATGCTAATTAATAAGGTAAAATGATTAAAGGaaatatattaatttaaaagATGTCTcaacatgtatatgtatatttggtTATGTAACGTGCCATTGAGAATttattctaaaataaaatgttgtattttgtgtCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25204 lncRNA downstream 179355 21113372 ~ 21115994 (-) True G18429
XR_005642012.1 lncRNA downstream 208474 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 208521 21085093 ~ 21086828 (-) True LOC120575525
TU25180 lncRNA downstream 208521 21085093 ~ 21086828 (-) False LOC120575525
TU25149 lncRNA downstream 358100 20936993 ~ 20937249 (-) True G18391
TU25298 lncRNA upstream 89652 21410908 ~ 21411199 (-) True G18492
TU25431 lncRNA upstream 206199 21527455 ~ 21583403 (-) True G18591
TU25432 lncRNA upstream 208741 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 209028 21530284 ~ 21532755 (-) False LOC120572042
TU25448 lncRNA upstream 289881 21611137 ~ 21612250 (-) False LOC120572205
XM_039787407.1 mRNA downstream 5055 21267704 ~ 21290294 (-) True blmh
XM_039788819.1 mRNA downstream 40038 21237188 ~ 21255311 (-) True slc6a4a
XM_039823868.1 mRNA downstream 81283 21195388 ~ 21214066 (-) True ssh2a
XM_039823724.1 mRNA upstream 96060 21417316 ~ 21435893 (-) False LOC120573852
XM_039823732.1 mRNA upstream 96060 21417316 ~ 21434367 (-) False LOC120573852
XM_039823742.1 mRNA upstream 100832 21422088 ~ 21435893 (-) True LOC120573852
XM_039823663.1 mRNA upstream 122087 21443343 ~ 21462495 (-) True LOC120573817
XM_039823672.1 mRNA upstream 122087 21443343 ~ 21462494 (-) False LOC120573817
TU25281 other downstream 33426 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 198148 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1153837 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1485219 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3072495 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 342839 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 680648 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1817957 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1818144 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1925347 23246603 ~ 23252420 (-) True G18948

Expression Profile