RNA id: XM_039781367.1


Basic Information

Item Value
RNA id XM_039781367.1
length 4801
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120546419
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39868408 ~ 39901447 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacaggcaggcaggcagacagatagacagacagacagacagacagacaggcaggtggTGCCTACCTCAGCCAGCTGGGACTTAAGGAAAGGAACTAGGAGGAATTTGGGGAGTGGCGTTTTAAagcttcctctttcctctccttacTCTCAAAGAAAAGGGGCCTAGCTATATTAGTCAAGGCAGAGGCGAAAGGCAGAGTGAGGGGCTTTAGCTCTTGATGCTAGGTGAAGTGCAGGCCTGATGGTTAGCCTTCTGCAGGTCAGACTGAGAGAGCAGTTAGAAATTACAAACCCTGCTGTTGGAAAAGTGTCTGAAAGATGAGGCGAGGCTGAAGAATAGTACAGTCATAGGGCTGTGACGCATCAAGAGGTGATGGGTTAAGCGGTTCCTGTGCCCTCTTTGAATGTCCGTCACCATGGCTAAGCGTGAGACCGGCAGCACCAGCCCTGTGGTCAGGCAGATAGACAAGCAGTTCCTGGTCTGCAGCATTTGTTTGGACCATTATCACAACCCCAAAGTCCTGCCCTGCCTGCACACCTTCTGTGAGAAATGTCTACAGAACTACATCCCTCCCCAGTCTTTGACACTGTCCTGCCCAGTGTGTAGACAGACCTccatcttgccagagaagggtGTGGCAGCCCTGCAGAACAACTTCTTCATCACAAATCTAATGGAGGTGTTACAGCGAGACCCAGAGTGCAGCCGACCTGAGGCCTGTAATGTTCTGGAGTCAGCCAGTGCAGCGACGGCCTGTCAGCCCCTCTCTTGCCCCAATCACGAGGGCAAGGTGATGGAGTTTTACTGCGAGTCATGTGAAACAGCCATGTGTCTGGAGTGTACAGAAggggaacacagggaacatgTGACAGTTCCTCTGAGGGATGTGCTGGAACAGCATAAGTCAGCGCTAAAAAATCAGCTGGACGCTGTGCGCAACAGGCTACCTCAACTGACGGCTGCCATTGAGCTTGTGAATGAGATCTCCAAGCAGCTTACAGAGCGGAAAAACGAGGCAGTGACCGAAATCAGTAACACTTTTGACGAGCTGGAGAAGGCCTTACACCAACGCAAGACCGCTCTCATTACTGAGGTGGAAAACATCTGCAGCACTAAGCAGAAGGTGCTTCAAGCCCAGCTGACCTCTTTGCTTCAGGGCAAAGAGAACATTCAAAGCAGCTGCAACTTCACCGAGCAGGCCCTGAGCCACGGGAGCGCCACGGAGGTCCTGCTGGTCCAGAAGCAGATGGGCGAGCGGGTCAGTGCCCTGGCCCGACACACATTTCCTGAGCATCCCCACGAAAACGGACATCTGGAATGCCAGGTAGAGACGGATGGACTGAGGCGCTCCATTCAGAACCTGGGAGTCCTGATCACAACAGGGACCGTAGGCCACACCAGTGTCGCCACCGGCGAAGGCCTGCGGCACGCACTGGTCGGCCAGCACACTACTGTCACAGTCACTACTAAAGACAAGGACGGAGAGCTAGTGAAGACTGGCAACGCCGCTCTGAGGGCAGAGATCATCTCTGCCGACGGAGTGTGCACTGAAGCCGAGGTGGCGGACAACAAGAACGGCACCTACGAGGTCGGATACACCATCCGCTCAGAGGGAGAGTTCACCTTCTCTTTGCTGCTGTACGAACAGCCCGTGAGGGGGAGTCCGTTCCGTTTGCGCGCCGTCAAGCCGTCGGACGTCCTGCAGTCGCCAGACGACGTGAAGAGAAGGGTGAAGTCCCCGAGTGGAGGAGGAGGTCACGTTCGACAGAAGGCTGTGCGCAGACCCTCCAGCATGTACAGCACCACCAAGAAAAAGGAAAACCCGATAGAGGATGAGCTGATCTACAGAGTGGGAACAAGAGGGCGAGATAAAGCCGAATTCACTAACCTACAAGGCATCTCCACCTCCAGTAATGGACGGATCGTGGTGGCCGACAGCAACAACCAGTGTATACAGGTTTTCACAAATGAAGGCCAGTTTAAGATGAGGTTTGGGGTCAGGGGTCGTTCACCAGGGCAGCTGCAGCGCCCCACAGGGGTCACAGTGGACATGAACGGGGACATTATCGTAGCAGATTACGACAACAGATGGATTAGCATCTTCTCTTCGGATGGCAAGTTCAAGAACAAAATTGGAGCTGGGAGACTGATGGGACCCAAAGGTGTGGCTGTGGATAAGAATGGGCATATCATCACAGTTGATAATAAGGCCTGCTGTGTCTTCATCTTCCAATCAAATGGGAAGCTGGTGACAAAGTTTGGAGCCAGAGGAACATCGGACAGACACTTTGCAGaaAAAAGTGGTGCAAACATTGCACTGGAACAAAAGCTTAGTAAATCTGGCCCTGTTTTCAGTCCTCACTTTGTGGCcgtaaataacaaaaatgaaattgtggTAACAGACTTTCATAACCATTCAGTCAAGGTGTACAATGCAGATGGGGAGTTCCTGTTTAAATTTGGCTCCCACGGAGAGGGCAACGGCCAGTTCAATGCTCCGACAGGCGTGGCTGTGGATGCCAATGGAAATATCATCGTTGCCGATTGGGGCAACAGTCGGATCCAGGTGTTCGACAGCTCAGGGTCCTTCCTGTCCTACATCAACACGTCAGCGGACCCCCTTTACGGCCCCCAGGGCCTGGCCCTCACGTCTGATGGTCATGTGGCGGTGGCGGACTCTGGGAACCACTGCTTCAAGGTCTACCGCTACCTGCAGTAGAGACCGGAGACGGCCATCTTCACCACTGCGAGCACTGACAACGACACAGCCAATGTATTCCCCCCCCCGGGTGCAATGACCTTTCCAATACAGCCTTTTGATGTGCACATCAGCTGATCTCCCGGATATAATTAAGTGTGTGATCATGAGTTTACCTTCCTTTATGATGTGTATTGAaggttgtttttaaagttgGATAATGTAGCATCCTTGTAATGGACATAAAGCTATGGACGGGTTTTAGAGAAGTGGcaaaaacagtttttgtgtgttgtacgCTGTTGATGGTATTATTAAATCACACTTTCTGTGAGACCGGACAGGGTAGGATTTAGATTAAAGTATTTAATGAGCCATAAGTTGTCCAAATGCATGACGTTTTCTTTTATCTTAATGCCTAGGCAACAACACAGTGTACCCATCGGTTGCTTTTCTCATGAACTAGTTAATGCTTACAGTGAAATGAACAGCGCTACGCTTCTCCAGCAATGGAATGTAAAATTTCTCACATACAAATGTCACCACCATCTGTGCATTGATttgctgtatgtactgtatatacataaatgtatattgtgtatattagatcactctgtatgtatgtgcttTTGAAACACACAGCCGTTTGGCTAttcagagagcagcagtcaaaGGATTCCAGGATTTTAAACTTGTGTGTATGGCAGCTGTTAAAAAAGTGTGCTTTATAAACATACCCAGCACATGCTTAATTGAAGAAGAGTGTCATATTTATTAATGTAAGCAGCACAAtaatcatttttgttaatatCTGTTgtttcaaaaggaaaaaaacaaaaggaaaaaaaaaatgctaatttattttattttatacactAGCTCAGCAattacaaattatttttctaaattgatgtgctttttttttctttagagcTTCACACTTTATCCCTATAccttaaagggaaatttcaccttTAAGCAGAATTCAGCATCcaacccccctccctcccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccatctgGAAACATTTGATCAGTGTTTGTGCATATTAGCAGCTTTGTCTCAAAGCTACAAATCCGTCTTTGTTTTAATCTGGGATTCTTATCCAAAAGAAAAAGTGTTCTCAGTTTCTCTGTTAAGAACAAATGGCTAAAGATTAGAGCTCATAGAATGATTGTTATGCCTTTAACAATTAAAGAGCTTTATTCATTGAAGTGCTAAGAGTTACGAACCAGAAAGAATACACATATCTCAGGAAATCCATGCAAATTAGACCAGCATGTCAATGGAACAACTTtcaatgtattgtttttaattcttttgaTAGTATCAAGTATCAGAGACGTTGGGAGCTTTGTGAGGAAACTGTTAATTGGTGCAAATGTAGTCTGGATCCAAGACCACAAAAATGATCGGGATGGAATATGAATTCTGTTTTACTgtggttttttgtgtgtgtgtgttttttttttttagctttcacATAGAAAACagttgacacaaaacacaaaatgattATATGAGGACATTTCTATTGGATAATATTTGCCAGCAAACTCATCCACGCTTTAGAACACACTCGCCTATGATACTGTTGAGTTTCTGCCTGCACTACATTAAGCCATGACTCCCAAGGAAAACCCTGTAGCAGTAGAGCTGTTGCTGCTCTTGCTCTCCCTGGTGTTCATTCTGTGTAATGTCATAAGACAACCTAGACCAGGTGCAGGAAGAAAGCTACTTCCTGGTCTGACATAATTACCCACAGCACTGTGCTTAACACCCACATTCACCCTCCCCAGGGTAGAGATTTTCCAAGCTACAGAATATGACCTGATTTCACCAGTGAAGTCAAGCAGGAAGCTGCTGTTTTTCATGCACCTGATCTGCTGTTTGACTCGTTGCCAAACAGGAGCCCAGACATCTTTAAACAGTCCAAGGCTCAACTTTTTTCAGACGTGTCTGATGCTGTGTCACACCAATACAATTTTGTTTTCACTATGAATATGCACTGGTAATAAAAGCACATGGTTTACTGaga

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11997 TRIM2_3; tripartite motif-containing protein 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30987 lncRNA downstream 921 39864821 ~ 39867487 (-) True G22811
TU30994 lncRNA downstream 10622 39857436 ~ 39857786 (-) True G22818
TU30992 lncRNA downstream 13814 39854280 ~ 39854594 (-) True G22816
TU30991 lncRNA downstream 14803 39853322 ~ 39853605 (-) True G22815
TU30990 lncRNA downstream 17172 39851037 ~ 39851236 (-) True G22814
TU31005 lncRNA upstream 42454 39924213 ~ 39924451 (-) True G22826
XR_005636503.1 lncRNA upstream 302988 40184747 ~ 40226319 (-) True LOC120544464
TU31115 lncRNA upstream 357573 40239332 ~ 40240348 (-) True G22917
TU31117 lncRNA upstream 359824 40241583 ~ 40244030 (-) True G22918
TU31118 lncRNA upstream 365462 40247221 ~ 40248092 (-) True G22919
XM_039781311.1 mRNA downstream 90488 39759961 ~ 39777920 (-) True LOC120546381
XM_039781319.1 mRNA downstream 111830 39735716 ~ 39756578 (-) True LOC120546392
XM_039781326.1 mRNA downstream 111854 39735716 ~ 39756554 (-) False LOC120546392
XM_039781486.1 mRNA downstream 171803 39693607 ~ 39696605 (-) False LOC120546526
XM_039781336.1 mRNA upstream 10450 39892209 ~ 39901251 (-) True LOC120546408
XM_039781555.1 mRNA upstream 22353 39904112 ~ 39912760 (-) False LOC120546558
XM_039781551.1 mRNA upstream 22353 39904112 ~ 39912760 (-) True LOC120546558
XM_039781583.1 mRNA upstream 22353 39904112 ~ 39912758 (-) False LOC120546558
XM_039781563.1 mRNA upstream 22353 39904112 ~ 39912758 (-) False LOC120546558
XR_005641089.1 other downstream 1132585 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 1504720 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 2122138 37734865 ~ 37746270 (-) False p4ha3
XR_005636371.1 other downstream 2212613 37651459 ~ 37655795 (-) True si:ch211-105f12.2
TU30252 other downstream 2599088 37264573 ~ 37269320 (-) True G22245
TU31014 other upstream 144123 40025882 ~ 40033156 (-) False LOC120546248
unassigned_transcript_105 other upstream 1150047 41031806 ~ 41031878 (-) True trnak-uuu_7
XR_005641814.1 other upstream 3354923 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 3354923 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 3646095 43527854 ~ 43527925 (-) True trnaa-ugc

Expression Profile