RNA id: XM_039781486.1


Basic Information

Item Value
RNA id XM_039781486.1
length 1518
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC120546526
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39693607 ~ 39696605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTCCCCATAGTAACGCGCGGACTCGCCTAGCAACACCACGGCACTCCTAAAAGCGCAGCAGGGACGGTTAAATTAGCTAGCCTTACTCAGCTAACATTGCTCTCTTTCAATCCGTTTAAAGCAGCGTCAGGAAACATGCGTGAGTGTATCTCCATCCACGTTGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAACATGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACTTGTGGAGGAGGAGATGATTCCTTCAACACCTTCTTTAGTGAGACTGGAGCTGGAAAGCACGTCCCCAGAGCAATTTTTGTGGACCTGGAGCCCACTGTTGTCGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACCGGCAAGGAGGATGCTGCCAACAACTACGCCCGTGGACACTACACCATCGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACCGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTTGGAGGTGGGACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTCGACTATGGCAAGAAGTCCAAGCTGGAATTCTCCATCTACCCAGCTCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAACGCCATCCTGACAACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGATATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCTTACACCAACCTGAACAGGTTGATCAGTCAGATTTTGTCCTCCGTCACTGCCTCCCTTCGTTTCGATGGTGCCCTCAATGTTGATCTGACAGAGTTCCAGACCAACTTGGTGCCATATCCCCGTATCCATTTCCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAGGCTTACCATGAGCAACTCTCAGTGTCAGAAATCACCAACGCCTGCTTTGAACCAGCCAATCAGTTTGTAAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTTTTGTATCGTGGTGATGTGGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATCAAGACCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATAAACTACCAGCCACCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGGCTTGACCACAAATTTGATCTGATGTATGCTAAGCGTGCCTTTGTTCACTGGTATGTGGGTGAAGGTATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAGGACATGGCAGCTCTGGAGAAGGATTATGAGAAGGTTGGAGCTGATAGTTTTGgagatgatggtgatgatgagggAGAGTTATATTAAACAGACATGCATTCCCCTTTATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30807 lncRNA downstream 461753 39227543 ~ 39231854 (-) True G22679
TU30806 lncRNA downstream 466204 39226744 ~ 39227403 (-) True G22678
TU30784 lncRNA downstream 495122 39197174 ~ 39198485 (-) True G22658
TU30749 lncRNA downstream 641709 39051210 ~ 39051898 (-) True G22632
TU30745 lncRNA downstream 650030 39043089 ~ 39043577 (-) True G22629
TU30940 lncRNA upstream 4901 39701506 ~ 39701882 (-) True G22772
TU30941 lncRNA upstream 14867 39711472 ~ 39711769 (-) True G22773
XR_005636903.1 lncRNA upstream 98342 39794947 ~ 39796770 (-) True LOC120546628
TU30981 lncRNA upstream 102694 39799299 ~ 39801947 (-) True G22807
TU30988 lncRNA upstream 137659 39834264 ~ 39834463 (-) True G22812
XM_039781443.1 mRNA downstream 2428 39680868 ~ 39691179 (-) False spartb
XM_039781436.1 mRNA downstream 2429 39680280 ~ 39691178 (-) True spartb
XM_039781450.1 mRNA downstream 2430 39680868 ~ 39691177 (-) False spartb
XM_039781399.1 mRNA downstream 19305 39652158 ~ 39674302 (-) False dclk1b
XM_039781391.1 mRNA downstream 19306 39652158 ~ 39674301 (-) False dclk1b
XM_039781319.1 mRNA upstream 39111 39735716 ~ 39756578 (-) True LOC120546392
XM_039781326.1 mRNA upstream 39111 39735716 ~ 39756554 (-) False LOC120546392
XM_039781311.1 mRNA upstream 63356 39759961 ~ 39777920 (-) True LOC120546381
XM_039781361.1 mRNA upstream 171803 39868408 ~ 39901447 (-) False LOC120546419
XM_039781355.1 mRNA upstream 171803 39868408 ~ 39901447 (-) False LOC120546419
XR_005641089.1 other downstream 957784 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 1329919 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 1947337 37734865 ~ 37746270 (-) False p4ha3
XR_005636371.1 other downstream 2037812 37651459 ~ 37655795 (-) True si:ch211-105f12.2
TU30252 other downstream 2424287 37264573 ~ 37269320 (-) True G22245
TU31014 other upstream 329277 40025882 ~ 40033156 (-) False LOC120546248
unassigned_transcript_105 other upstream 1335201 41031806 ~ 41031878 (-) True trnak-uuu_7
XR_005641814.1 other upstream 3540077 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 3540077 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 3831249 43527854 ~ 43527925 (-) True trnaa-ugc

Expression Profile