RNA id: XM_039781551.1


Basic Information

Item Value
RNA id XM_039781551.1
length 2045
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC120546558
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39904112 ~ 39912760 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTAAAGCTGTTAGCTTGGCTGGATGCAGGGATTTTCTGGCTGAATTACATGGAAGCAGGCAGATAACGTGAACGTTGCAGGGAGAAAAATCATGGATTTagcatttaataataattaaaaaaaaacaacggtgcttttccgttgaacttattttgtatttcaAGGCTGCTGTCTGTGCAAACAACGGCTTGTTTCTCCTTCGGACGACTGGACTTGAGGTTTGCTTCAGTGGTGAGGAAGCTAGCTGTCAAGTAGTAACGTTAGCTCACTAGCGGCCACATCAGCACCGCTGAGATTAGCCAGCCGCGTTAGCATCAATAGATTAAATGATGGCAGACAGTATTATGAGCAAGGCTGCCACCATGGAGATCCCCATTAACAGCAACGGAGACACAGGGACTCTGCCAGAGGATGACAGCCTGGAGCAGGATTTGCAGCAGGTGATGGTGTCTGGACCCAACCTGAATGAAACCAGCATTGTCTCAGGAGGTTATGGAGGACCTGCAGGGGGCATCATTCCCACCAGCACCATCAAAGGGCCTGCAGTTCGCTTCAACCCTGAGTATCTGGACAGAAGACGAGCCCCTGCACCCGGACCAGACATTCGCATGAAATCCAGGGGCGTTGGCTTGCCTAACAGCCAATCTGCAACCAGTCGACTTGCCCAACACCCAGACCAGCATCCAGGGTCGTCGAACAATAACACTGGTAATTCCACTGAAGAAGTTTCTCGTGGTGTGGCAGTGGAGAAATTGGACAGTGTAAAGAAATGGGGCATCAACACGTATAAGTGTACAAAGCAGATGTTCTCCGAGAGGTTTGGCCGAGGTTCACGAACCGTAGACCTGGAACTGGAAGCTCAGATTGACGTGTTGAGAGAGACCAAGAACAAATACGAACACATCCTAAGACTGGCCACTGCACTCACCAGTCATTTTCAAAGCATGGTGCAGACACAACAGGCTTTAGGAGACACCTTCACAGACCTCAGCCAGAAGTCCCCAGAGTTGCAGGACGAGTTTGGGTATAACGCAGAAACACAAAAGCTGCTGTGTAAGAATGGCGAGGCTCTGCTTGGTGCCATCAGTTTCTTTGTGTCCAGTATCGACACCCTGGTCAACAAAACAATGGAGGATACTCTGTTGACCATTAAGCTGTATGAAAACGCAAGACTTGAGTTTGATGCCTATCGGTCTGATCTGGAGGAGTTGAGTTTGGGCCCTCGGGATGCAGCTACCATGGTCCGCATTGAGATGGCTCAGCATGATTACCAGATCCACAGAGACAAATATGAAAGGCTGCGTAGTGACGTCACCATCAAGCTCAAATTCCTGGAGGAAAACAAGgtGAAGGTTATGCACAAGCAGCTGCTTCTCTTCCACAATGCTATCTCAGCTTACTTTGCTGGCAACCAGGAGCAGTTGGAACAAACTCTAATACAGTTCAATGTTAAGTTAAAGCCCCCGGGATCAGACAAGCCATCCTGGCTGGAGGAGCAGTAAAGAGCGCTTGGGGTGCAGCTGTTTGAGATGTGCAGGGACACGCTGGTCACTGAAGAACTTGGCATTGTGCTTAGATGGACAAGAGTGAAATGTATAAAAAGAGTATATTGTAGGATCAATTGCGACCAGCGATAATGAAAAACATGAGATTTTTgattttgtaatgttttacGTATTGCATAGACGGTACAACAGTTTCAgttgtatttatattttcttgTTAATTCACAAAATGACCTTTTGTTACTCATTCTTTAGGTAGCACAATCATTTACATGAACATCACGTAttatttatgtacagtatagtcTACTATTGTGGAGAGACCCCTTGGCAGTTTTGCACATGCATTATTTAGTCGTTTCTTAATGTTGTCTAAAGCGATATATATCACAAATCAGATTAGCTAATTAGTGggatgatgttaaaaaaaaattatgaaatatcccctgaaattgtatttattatttctctTGGGTATACACAACTGAACCATATTCTTCAAATTTAGTTTTACAGAATTAAATCAAAATCAGGATATA

Function

GO: NA

KEGG:

id description
K20314 ARFIP; arfaptin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30987 lncRNA downstream 36625 39864821 ~ 39867487 (-) True G22811
TU30994 lncRNA downstream 46326 39857436 ~ 39857786 (-) True G22818
TU30992 lncRNA downstream 49518 39854280 ~ 39854594 (-) True G22816
TU30991 lncRNA downstream 50507 39853322 ~ 39853605 (-) True G22815
TU30990 lncRNA downstream 52876 39851037 ~ 39851236 (-) True G22814
TU31005 lncRNA upstream 11453 39924213 ~ 39924451 (-) True G22826
XR_005636503.1 lncRNA upstream 271987 40184747 ~ 40226319 (-) True LOC120544464
TU31115 lncRNA upstream 326572 40239332 ~ 40240348 (-) True G22917
TU31117 lncRNA upstream 328823 40241583 ~ 40244030 (-) True G22918
TU31118 lncRNA upstream 334461 40247221 ~ 40248092 (-) True G22919
XM_039781361.1 mRNA downstream 2665 39868408 ~ 39901447 (-) False LOC120546419
XM_039781355.1 mRNA downstream 2665 39868408 ~ 39901447 (-) False LOC120546419
XM_039781336.1 mRNA downstream 2861 39892209 ~ 39901251 (-) True LOC120546408
XM_039781376.1 mRNA downstream 14057 39868408 ~ 39890055 (-) False LOC120546419
XM_039781347.1 mRNA downstream 14057 39868408 ~ 39890055 (-) False LOC120546419
XM_039781055.1 mRNA upstream 30811 39943571 ~ 40033150 (-) True LOC120546248
XM_039778154.1 mRNA upstream 314609 40227369 ~ 40260253 (-) False LOC120544420
XM_039778146.1 mRNA upstream 341193 40253953 ~ 40260253 (-) True LOC120544420
XM_039789418.1 mRNA upstream 347600 40260360 ~ 40268274 (-) True usp16
XM_039779615.1 mRNA upstream 377245 40290005 ~ 40470176 (-) False cadm2b
XR_005641089.1 other downstream 1168289 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 1540424 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 2157842 37734865 ~ 37746270 (-) False p4ha3
XR_005636371.1 other downstream 2248317 37651459 ~ 37655795 (-) True si:ch211-105f12.2
TU30252 other downstream 2634792 37264573 ~ 37269320 (-) True G22245
TU31014 other upstream 113122 40025882 ~ 40033156 (-) False LOC120546248
unassigned_transcript_105 other upstream 1119046 41031806 ~ 41031878 (-) True trnak-uuu_7
XR_005641814.1 other upstream 3323922 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 3323922 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 3615094 43527854 ~ 43527925 (-) True trnaa-ugc

Expression Profile