RNA id: XM_039781761.1


Basic Information

Item Value
RNA id XM_039781761.1
length 5982
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC120546637
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 25756303 ~ 25889552 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttacgttttgatCCATGCGGGGCTCCTGCGCCTGCACTCGGCACTTGGCGGAGAGACGCGCAGGGCAGGCAGTGGtgtgctgctactgctgctgctgctgctgctgctgctaccgtgAGGCTCAGTTCACCACAGTCCTTCTCCAGTCACGGTAAAACAGTTAGGGATTCCTTCAGTGTTCGGCCGGGGATGCGCATCTGGACCCGAGTGTCCCGGGAACAATTACGCATCGAGGCGCTGCgctctccctgtctctgtctcccagcCCTCACAGACGAAATAATCGCACCGGTTGAGGACAGTTTGGCTATTTGTTTTTGACAGAATGGCAGGCGCAGATTGCCTTCTGAAAACGCCGAGGCGGATGTCTGCTGGGTACCTGGGACCTGGGAGCCCCGGGAGCACCAGAACGCACCAATCTGTCAATCATCACCGTGTCGTGATGGAAAGTAACTTCCAGTCGTCTGCCATGTTTGAAGGCTCAGAGGCCGTCGAGGTGGAGGGAGGCAGCACGGAGAGCACCGTGGCCTCGTCCATCAGCGCCTGCAAGAAGGTGCTGTGCAGTAACAGTATGCTGGACTCGTCGGAGTACTGGCTGAGGAATGAGAAAGCTCTCTGCAGACTCGGCCTGCTGGACGACGACACGGAGGGCAGCTGCACCATGATCTGTTTTGTAAATCTGGACCCTCAGAAAACGGACTATCGTGATGACAAAAGCATCAAGAAATTGGCATCGGTGTCTCCAGACCTGCCAAAGCTCGTTGAATTGCTGACTGTCCACCAGCCGAAAGAAAATGAGATCCTACTGCTCGGTGGCCTAGAAGCCTCAGACACTTGCCAAACACACCCTCTCTCCCCATCTCAGggtggacagcagcagcagagaagtACAGGTGTGTGCCTGGTTCAGTGTTCAGGGCAGAGGCGCTCCACCCAACCTAGCAGCATCATCTTCGAGATCAACAAGTTcctgattggtctgcagtgGGGAAAGGAGCAACAGCTTCAGCCGGGTCGAGCAGCCAGGCAGAGAATCGATGACGACACTAATCGTTCCATCTCGTCCATAGAAGAAGACTTCCTGACGGCCTCAGAACACCTTGGTGATGACAGCGAAGATGATGGTTTCAGAAATGAACCAGAGAGTGGTGACCTGGCAGAGAGCTTGGTTGAGGTCGCACAGACACACTGCGTCAGACTTGCATGTCATAGGGGACAGCTGGCCCATCATCAGAACAGGGAGGAGGCTGAGGTGAAAAGGGAAGGGCATCGGCGAGCAAGCCTCCATACTAAGGAATCAGCTGGTCACTACGCCACCAATCTGGCCGAGTCAGTACTGCAAGATGCCTTCATACGCCTCTCCCAAGATGAAACTTCCTTTGTCTCTGAGGCTGCTGTCAGCGTGTCCCTCTCTAGTTGTCCTTCCAATGCCACTGGTCCATCAAAGACCAAAGAGCCTTCCCAAAAGCGCACTTGTTCTTTTGAACTCCCCAAGATTGTTATAGTTCAAAGCCCAGACAGTTCTGACGGGACTTCAGAATGGCCAGAGACACAGGTATCCCATGTGCCTGACAAGGATATCACTGGCAAAGCTGCAGAGATGCCAGAGAATGGGACACAGGCTCACATCCCCCATCATAATGGAGGACACCCATCCAAACATGTAGAGGTGGCTTTGGCCTGTGCTGCCAGTGTCATTGGCACCATTACCAACCCACAGCTGACAGAACAGCTTGCCATGAATTCGACTTCAGAGGAAGATTCTGAGGAGGAGCTGCAGGAACAAGAGGAAAGAGATGACTACTCCTTCTCCTCAGCCATGTGTGGCATGGCTCAGGTAGCTGGTGCTGTAGCAGCTGTAGAGCTAACAGAGGAGTCTGGGGAGTGTGGTGATTCCGAAGAAGATTCCGCTGAAGTCTACACGGCATCCCGTGGTCTGATGTCTGCTGCAGAAGCCTCTGCAGCCATCACGCTGCACTGCAGTGTGGCACAGGGTACCAGCGTTGAAGCATTTCGTGCCAACATTGCTGAGGTCCTACACAGGGAAGCAGCGGAGGTGCTGACTCAGCCACAAGGCTACAGAAGTGTAGCCCACCTGCTGGAGACCACACATAACAAGATAGTAGATGGCATTACTTGTCCAAAACAATCCTACACggatgaaagagagatggatgaCTTGATAAATGAGGTGGCAGACAGCCTATTCAAGCATGCTTTAGAGaaagcaaaaatgcaaaaagaaCTGGAGGGTACTGGAAAAGATTCGCCAGGCCTTCAGGGTTTTCTGCAGGAGAGTGTTAACAATTTGCTGTTTGATATACTTCGTCTGACACAGAAGAAAATCAGTCACATCTCTAGATGTGAGCAAGGGTCATTTGAGATGCAAGAAGGTGATACCTGTGCTAGGGAGCCTGCAACCACAAAGGAGAGTAGGGATCCATTAGGTCAATTACAGTGCTTCATTGGCCATGGCCAGTCCACTAATTGTGATAACCACTGCAGCATACTACACGGCACAGATAAGCTTCCCATGGCTCCTGGGCTGAAGGAGAAATATGTGCTTGAGGAAAGTGAAATCATTGGATCGTCCTCTACAGCACACAGCAAAGAGCAGCACCAGTCATCATGCAGACAAAGTCAGTCAAAATCCACCCATTTGCCTGCTATGGACTTCTTTGACCACCAGCAGATCCAACAGGGCAGTGGTGCAATCAGAGAACCTTTATGTGAAATTCAAGTTCATAGCACAGACAGGAGGGGGCGTCTAGTGACAGGCAGCGACAGCAGACAGGCCTCCCTCACACCCCAGTCGTCCTTCAACTCTTGCAGTTCTCTGCTCTCTTGGAGAATGGATTCAGAGTCCAGGACACCTATTACTTGCTATGCTGATGATTTGGCTGCTACAGTGGTGTCTATGGCCACAGAACTGGCAGCCATCTGCCTGGAAAACAACACTGGGAAACAACCCTGGTTCTGTGCCCTAAAAGGGATGTCTACCGAAGGGCCAGAAGCCTACTTGATTCCTGCTTGCTGCACAGTGCTCAGGAGGAAAGAGGCTCAGAGTAGCAATGTTGCCTCCAAGAAACATCGGGCACCACGCCTTAGTGAGATCAAGAGGAAAACAGAGGAGCAACCAGAGCTGATGGAGCGGCTGGTGAACAGGGTGGTGGACGAATCAGTAAACCTAGATGAACCGCAGGACCCATTTGCTCTCTTTGCCTCTGAAGTCACGGCCAGGATTATGAACTGCCCTGAGCTTAATGTGGTGGATACCTCCAAAACAGGCCAGCCACGCAGTAGGTTACAGTGTGAGAGGTGGAGCCGTGGGAAGGCATCTAGTTATGAGAGCATTCCAGAAGAAGACGCAGACCCCTCAGGCACACTCAACACCCTGGGCCTTGGCAGTCGGTTAGGTCAGAACTTGAGCCGTGGTAGCTCAATCTCTAAGCAGTCCAGCTGTGAGAGCATCACAGATGAGTTCTCACGCTTCATGGTAAACCAGATGGAGACTGAGGGAAGGGGCTTTGACCTTCTGCTGGACTACTACGCAGGGAAAAATGCCAGCAGCATTCTGACTGCAGCTGTACAACAGGCTGCATCAAAGAAAAATGGTCACCTTAATGTCAGGACCTCATCCTGCCTGTCCAAACAGTCTAGCACAGAGAGCATAACAGAGGAGTTCTACAGGTTTATGCTTCGGGACATGGACAAGGAGAACCGAGAGTATGGCATCGCCAAGACTAAGGAGTGGAGCAACAGCCTGTTCCCCCCTTCCCCTAGAACACCCTTCTGTATAAGACAGTCCTCTGTCCCAGACCGGCGCTCCTCAGACTCGCGACTGACTGTCAACTCACCCATTAAAGCAAACTCTTTTGATGGATTCGCACGCAATGTGCATGGAGACACACTAAATATCTTCCCCACCAACTCAGTGTCAGCCACAGGACTGTGTAAGTCAGACTCCTGCCTCTATCAAAGGGGTAAGACTGACCATATTACTGATATGCTGATTCATGAGACCTGGTCGAGCTCCATTGAGTCCTTGATGAGAAAGAACAAGATTATTGCTGATCCAGAGGACAGTATTGAGCTGGAGGCTGCAGGAGACTCCCAGCCCCATGTGCAGCAGTTTGCCAATCGCCTGGCAGCTGACATTGTAGATATAGGCAGGTCTGCACTGGGGGGCCAGCAAGATGTAGCTGGAGGTACACCTGGGATGCTCTCACAGCCGCACATGCCTGTTGGTGAAAGGAGGAGGGGGTTCAAACAATCTCATCTAAGTTGTAGTCGGAGAAGGTCCAGCCAGGAGCAAACTGGTACTACAGTAGCATCTGGGAGGAGTCATAGCAGCTCACCCCGCATGAGGGGCCCCAGAGATGTGCCACTGATCCACATTGAGGGAGATCAGAGGGATGAAGAGACTATTTTAAACCCTGAAAGGACAGGAGGAGGACCTGAGGAAACACCCCCAGACGTGTCAACTACCAAGCGTACGGAGAGAGCTACGGCCAACGGCAGCAGGAATGGAACCAGCAGCGCATCCAGCCTAGGCCTGGCAGACCTGGATGCTTTTTCTGATGTGCTCACTCAGAGCACAGTAATCAGTGAGGAGACCGAGAAAGGACATCTAGCAGGAACAAAGGAACATGTCTTTGAGAGCAGTTCAGCGAGGACGGCGGGCAGCAGTAGCAACCTCAGGGCGCTGTTGGTGGTAAACTGCGACCTTGAGCCTGAGTGTGTGGACTCGGAGCTGAGATTGGCCCTGCAGTGGATTGCTGCCTCCGAGCTGGGACTTTCTGCTCTCTACTTTAGGAAGACCAAAGAGAAGAGGGTTGCAAAGTTCCAGAGGGTGGTTCATCTGATGTCTCAGAAGGCATGGCGGATTGCAGACTTGTTCAGCGCTGTGGTCCAGTTCTGTAAACTAcatgagaaagagaaagaggaccgGTCTCTGTCCAGCCTGTTTGATTGGCTGTTGGAGACCCTGTAGGGCTCTGCTCTGTAGCTTCCTCATACTGCAAACAAAGACACTTGTTCGCTCACACTTCTAACATGTTCCAACCTTTTTGCTCATCACACCAAGTGTCTCCTACTGTAAACTGACAGCACAATGCGATCAGCATACTTGAGAAATTCATACACCTCAATCTGTCCATGAAAGCTATGAATGGACCAGTCTCCCTTTAATAAAAGAAGATTTTCATCTTCACCTTCACCTCActagtgagacacacacacagagcaaactGTAGGTATACGGGTTGGACATTTCTGATGAGAATGAACTAGGCTTCACAAGATTATAGTCAGCAGATTTTAACTGCTccagattatatatatatatatatatataaagattcTCAGAACCAAATTAtgagtttatttatttacttattccAAATGAACACACATGAAGAAAAGAATAGAAGATAGGAAAATCAGGTTAAATTCTCCCAACAACTTAATGTACTCAAACCTTTTGTATCAAAACTACATTGTAAAAGACGCTGTTGAAAGAtaagccccaaaaaaaactcTTTCACTTTCTTCGGATTCGCCATTTAATAGTGCACATTTGCTCAAAGCAACAAAATGCCCATATCTTTGTTGTGTTCATCGGCCATTATACCACCTCTGTTGTGACCTTGAAATTCAGTTCCAAGTAGGTATGTTAACTTATTTATGTTACATGAGAACTGATTATTTTGGATAGATgatttgtatatactgtagatttGGAACTGCTGCACCTTGGAGTAGTGGACTGCTCTCTTTAGCTTTTACTATGTCAGGAAAACGGAGTACGGTTTGTAATGTTGAATTTGTATGTGAATTTGGTCTGTTTATTTCTCTACTTAGTGGTACTCTAGTGTTACATCAGCATTgggaaagaaaagcacacaattcCACTGTAAACTCTGTCACGGTAGAACTGAATGTATTTATCTTTTGACATCAATAAATTTCTGTGATGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26546 lncRNA downstream 25188 25721493 ~ 25731115 (-) True G19466
TU26503 lncRNA downstream 89074 25622986 ~ 25667229 (-) True G19438
TU26464 lncRNA downstream 289797 25430426 ~ 25466506 (-) True G19412
TU26447 lncRNA downstream 342781 25413195 ~ 25413522 (-) True G19401
TU26445 lncRNA downstream 400571 25355522 ~ 25355732 (-) True G19399
TU26638 lncRNA upstream 288826 26078924 ~ 26089702 (-) False trip12
TU26656 lncRNA upstream 334139 26124237 ~ 26128420 (-) True G19551
TU26673 lncRNA upstream 378576 26168674 ~ 26170568 (-) True G19566
TU26800 lncRNA upstream 506401 26296499 ~ 26300091 (-) True G19663
TU26797 lncRNA upstream 517639 26307737 ~ 26310671 (-) True G19660
XM_039822503.1 mRNA downstream 9123 25742506 ~ 25747180 (-) True slc19a3b
XM_039790567.1 mRNA downstream 14568 25738490 ~ 25741735 (-) True slc19a3a
XM_039790575.1 mRNA downstream 15170 25738490 ~ 25741133 (-) False slc19a3a
XM_039790404.1 mRNA downstream 44888 25708792 ~ 25711415 (-) True dnaaf1
XM_039790509.1 mRNA downstream 56765 25639979 ~ 25699538 (-) True megf6
XM_039786667.1 mRNA upstream 160453 25950551 ~ 25982215 (-) True pid1
XM_039790621.1 mRNA upstream 196496 25986594 ~ 26038558 (-) True dner
XM_039783956.1 mRNA upstream 251197 26041295 ~ 26068587 (-) True trip12
XM_039783913.1 mRNA upstream 251516 26041614 ~ 26087874 (-) False trip12
XM_039783999.1 mRNA upstream 251516 26041614 ~ 26071863 (-) False trip12
TU26301 other downstream 1503390 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 1928349 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 1997477 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 2503883 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 2607788 23139400 ~ 23148515 (-) False G18885
XR_005641049.1 other upstream 516966 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 530842 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 530844 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 530844 26320942 ~ 26334687 (-) False LOC120570356
XR_005641066.1 other upstream 644183 26434281 ~ 26445935 (-) False LOC120570434

Expression Profile