RNA id: XM_039781806.1


Basic Information

Item Value
RNA id XM_039781806.1
length 3415
RNA type mRNA
GC content 0.44
exon number 14
gene id sept4b
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 29720016 ~ 29771339 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtacacgcaCCAGGGGGACGGGTTTGTCCGGTCAAACACACGGGTTGTCATTTCGCCGCTGTTGTGTTGGGATTGAGAGAGGGAATTAAGTAAATACTGAAGAAGACGAAGACGGTCGACGCTGAAACTTTGAAAGATGGAACATTCGTCCAGCAACAACCGGTTTCGGTCCACAATCTTCAACCACGACGATGAGATTGCAGAGTGCACTGTAGCCCCAGTTGCAATGGAGGAAAGTGACCATGAGGTTCACTCTTCATCAGACGAGCAGGACTCTTGCCCTGCCTCCCCTAATCCCAGCGGAGACCATGATGCTGAACAGCATTCAAGCCATTCAGACGACTCAGAGGTGGAGAACATTATGCAAGACCCTCACCACCAAGGAGGGCACGGCCACCACCACCATGACCACAAgcatcaccaccaccatcatGGCCATGAGCCTCATGATGCAGACAGGGAAGCTGAGGGCGAAGACCGCCCCCACACCCCGTCATATTTGCGCCCCCCTGTGGCAGGCAGGGCGCAGTCGGATTCAGGTTCAGAGCCCAGTTTACTGCAGAGCAGAAGTGTGGAGTTTGACTTGCCATGCCCCATCAGTCCCATCAGTCCCTCCAGGCCCAAGAGTCCCTGGGGTCGATTTGACCCGTACAACAATAATGAGgACCAGGACAAGGAATATGTGGGTTTTGCGACGCTGCCAAACCAGGTGCACCGCAAGTCAGTGAAGAAGGGATTTGACTTCACGCTCATGGTGGCAGGGGAGTCTGGCCTGGGAAAGTCCACCCTGGTCAACAGTCTCTTTCTCACAGATCTTTACAAAGATAGAAAGCTGCTTAATGCTGAAGAGCGAATCACACAAACGGTAGAAATCACCAAACACACAGTGGATATAGAAGAGAAAGGTGTCAAATTGAAGCTCACCATCGTGGACACCCCTGGGTTTGGAGATGCTGTAAACAACACTGAATGCTGGAAGTCAGTGGCGGACTACATCGACCAGCAGTTTGAGCAGTACTTCAGGGACGAGAGTGGCCTCAACCGCAAGAACATCCAGGACAACCGCGTACACTGCTGCCTCTATTTCATCTCACCCTTTGGTCATGGCCTCCGGCCTTTGGATGTGGAATTTATGAAAGCTCTACATGAGAAGGTTAACATTGTCCCCATTTTGGCCAAAGCAGACACACTCACCCCTAGTGAggtcaagaagaagaaaatcaaGATCCGAGAGGAGATTGAGCAGTATGGTATCAAGATTTACCAGTTCCCCGACTGTGACTCTGACGAAGATGAGGACTTTAAGCAGCAGGACCTTCAGCTGAAGGAAAGCATTCCCTTTGCAGTGATTGGCAGCAACACAGTGGTGGAGGCCAAAGGGAAGAGGGTGCGAGGCCGTCTCTATCCCTGGGGCATCGTAGAGGTGGAGAACTCGGCACACTGTGACTTCGTGAAGCTGAGGAACATGCTTGTTCGCACACATATGCAAGATCTGAAGGACGTGACCCGGGAGACTCACTACGAGAACTACAGAGCCCATTGCATCCAGAGCATGACACGCATGGTTGTGAAGGAACGCAACCGCAATAAACTAACCAGAGAGAGCGGCACAGACTTCCCCATCCCCGTGGGGCCCGGAGTGGCGGACAGCGATACAGAAAAGCTCATCCGAGAGAAAGATGAGGAGTTGCGGCGGATGCAGGAGATGCTGGAGAGGATCCAAGATCAAATGCACACTCAGAAAGACGGCTATTAACGCAGGACAGCACCGTGCACATGTCTCTCTGTAACTgggataaaaaacaaaaacgccCAGGAAACCTTTATTCCTCTCCAGAACATTGACATCCCCATGTGTCCACCCAACCACCACTCAACCTCATCAATAGCACGTTACACTTGGATCAGGGACCTGCGAGGAGGTTGTAAGATGTTCTGACATTTTCAGCTTCCCTTTATCCTCTCGACATTATGGCACTGCTGCTTGCAAAACACTTGACCCTCTACTGTTTTCTCTTCTGACAacactttaaaataattttaaaaaacaggtttgtttgtttaaataaacttTAATGGTAAGGAGGGTGGAATAGCAGCGTATGTTGCGATCTGATTTTTCTAAATCTGAACTTTATTTAGCCACATGATCacaatgttgttttattttattttttacatgagGTCTGATATGAGGTTTACATGTGGTGACCtgctcagattttttttaagcacACTTTTCTGGTGcaggtgtttattttttatattatctcTATAGGTCAACATGCATACTGTAATAATTTAATTTTCTATATTACACTCATAAACATTTGTTCTACTGTTTGTCATCTTTTATGTATTCCTTGTTTTATTTAAACTACACTGCTTGACATTATGTATGGAGGATTGTTTTATGTAGATTTCCCCCAGCAGAGACTCCTGTTGGTGAATTTGGTTTAATCTTAATGCAATTATTGTTTAGACTAGTTGAAAATTTTGTTTTATCAATGTCTGCATGTTAATCATACTTTGCCACATCTGCTGCCTGACAGCATGGATGTTAGTGGCTCCGCTCAATCTTGGCCAGTCTTAACTCACTGCAACGCTTACTGATGCCATatcaacatttgaaataatcttACTTTTTACATGGCAAAGGAGTCCATTATTATTTTGAGAATTCCCCCAAAACAGAGTTGTTTTAAAGTCAGTTCATCTCATGACAAAACCAACAGTTTACATGTGAGAGCTGATGAAACCTGTTAGTCGTTAGAGATGATGAGGACTTTGATAAGACAAGACCCTTTGATTTGCATGATGTGAGTGTCCAAGGGAAGGGTCGCATCAAAGGCCATgcagtgtatttatttttgcatgTGTTATGTGAAGGATTATCAGATTGCAGATCAATTAAGTTATCATAAGGTTATTTATGGGCAATGAAAAATATGTAGCTACTTAAATGGTGGGGAAAATATATTGGAAGGAGGTGGattatgttattgtattttgGTTGGTTATAATTATTTCCTCAGTTCAAGGGAACCCATATGTTGGATGTGTGCTAACCTTAATTTTTTATCTTATAACCAAAGCCAACAAAGACAAACCTAAATTGTCCTAAATTTTcgattttcctttttaaagtgtgaaatttgttttgtattgagATGAAGAATATGACTTATCAAAGCCAAGTGTAAGGAACAGAATTATTGGATAAACTTGATTAATCGTTTCAATGATCCtaagtatgacttttttttggaaaTGAGATGACTCTGCCATGTTGGGTGACCTTTgttatgctaaaaaaaaaaagtacattccTTGAGCTTCTGTCCCAGAGTCAGGTATTACATTTGTTTCTgaatttgttttatattaaatTTGTCTTTTGTTATTCTA

Function

GO: NA

KEGG:

id description
K16943 SEPT4; septin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27904 lncRNA downstream 26555 29693206 ~ 29693461 (-) True G20526
TU27853 lncRNA downstream 57237 29661547 ~ 29662779 (-) True G20482
TU27851 lncRNA downstream 63931 29653143 ~ 29656085 (-) True G20480
TU27827 lncRNA downstream 113862 29604839 ~ 29606154 (-) True G20463
TU27822 lncRNA downstream 121269 29593404 ~ 29598747 (-) True G20458
TU27939 lncRNA upstream 136839 29908177 ~ 29908403 (-) True G20541
TU27944 lncRNA upstream 153059 29924397 ~ 29928949 (-) True LOC120575052
XR_005641945.1 lncRNA upstream 153122 29924460 ~ 29928951 (-) False LOC120575052
TU27948 lncRNA upstream 165543 29936881 ~ 29943898 (-) False G20548
TU27947 lncRNA upstream 168086 29939424 ~ 29943898 (-) True G20548
XM_039826430.1 mRNA downstream 193694 29519140 ~ 29526322 (-) True aifm4
XM_039778721.1 mRNA downstream 211637 29491164 ~ 29508379 (-) True prpf8
XM_039778720.1 mRNA downstream 211637 29491673 ~ 29508379 (-) False prpf8
XM_039780256.1 mRNA downstream 229372 29477893 ~ 29490644 (-) True LOC120545703
XM_039780263.1 mRNA downstream 229374 29477893 ~ 29490642 (-) False LOC120545703
XM_039824641.1 mRNA upstream 4187 29775525 ~ 29829377 (-) True limk1a
XM_039824649.1 mRNA upstream 4187 29775525 ~ 29819448 (-) False limk1a
XM_039824644.1 mRNA upstream 4187 29775525 ~ 29814700 (-) False limk1a
XM_039824653.1 mRNA upstream 4187 29775525 ~ 29791502 (-) False limk1a
XM_039824729.1 mRNA upstream 59149 29830487 ~ 29889063 (-) False elna
unassigned_transcript_101 other downstream 207296 29512649 ~ 29512720 (-) True trnaw-cca
TU27758 other downstream 271361 29447170 ~ 29448655 (-) True G20417
unassigned_transcript_100 other downstream 1569364 28150580 ~ 28150652 (-) True trnar-acg
unassigned_transcript_98 other downstream 1653619 28066325 ~ 28066397 (-) True trnam-cau_1
TU27044 other downstream 2630952 27088606 ~ 27089064 (-) True G19840
TU27977 other upstream 196455 29967793 ~ 29972330 (-) False im:7138535
TU28102 other upstream 395137 30166475 ~ 30171816 (-) False cbl
TU28193 other upstream 914873 30686211 ~ 30690379 (-) False spa17
TU28195 other upstream 914873 30686211 ~ 30690425 (-) False spa17
TU28194 other upstream 914888 30686226 ~ 30690379 (-) False spa17

Expression Profile