RNA id: XM_039782018.1


Basic Information

Item Value
RNA id XM_039782018.1
length 1925
RNA type mRNA
GC content 0.50
exon number 12
gene id cfap45
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23278602 ~ 23283802 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCGCAAAGTTGTCAAGTTTATGAGTATGATAGCGACATTTAGATATAACAAAACATTTAGCTCGTATTATTAGTCTTTGGAACTTGTTAACAATAAACTAGAAACGTTAGCGTttagactagctagctagctaaaacaTTAATTTATTCTCCTTTGCTCTGGGCACCAATAACCGCGGACCATGAGACTGGCATCCAGCTCCACGAGTTCAAGGAGCAGCTCGGACACCCGCCGGTACCGCATGCGAGCCCCAACCTCTCAGGTGGATGAAACCCTGTTTGGGAGCCAGAAACCGATATCATCACCGCTAGACATACGTGGAAACTCAGCCTCCAAGGCCAAGAATCCGTCCCAAAAGAACCAAGAAGGAGAGACTGTTGTTCAAATCGTCACCAAGGACCTCATTCGCAATCTCAGGATCCCATTTAAGGATCCTTCAGGAGAGTCCATTATTCTACCATCAGCTGAGTTTGAGCGGATCGCCTCAACGTCCCGGGTTGTCACCAAGGAGCAGAGGGAGGCCCTGAGGGAGGCTTatcacagaaagaaagaagaggaaattaatgctgcagagGAAAGGAAGCGTCAAATATATGAGGCAGACTTGTCCCGTAAGGAGAACCAGGCACTGACGGAGCTGGAGCGCGAGGCCCGGGACCGTGCTCAGCGCTTAGTGGAGCGGGCCAACGCCTTAAAGATGGAGCAAGAGGATGAGATCAAAAAGCTCAACAACCTGATTATGGGTGCTCAGTGTCAAGCCACTCGTGACACCCAGATCCAGGAGAAGAAACAGATCCAGGCAGAGTTGTCAGAGGAGGAGAAGCGTCTGGATGCCATGATGGAAGTGGAGCGCCGCAAGGCCTTGGAGACCGTGGAGCAGATTGATGAGCTGCGCAAACAGCAGAGGATCGGGGGAATGCAGAAAATCTACAACCAGATCCGGCAACATTTGGAGGAGAAGCAAGTGCAAGAAGTGatgaaagagatggagagacagcAGATACGAGAGAACCAAGAGAAAATGAACCTGGAAGACCTGAAGGCCCTAGAGAAGAAGAGGGACGAGCAGCAGCGTCTGTTGGAAGAGATCAAGTGTATCAACAGAGAGACTTTGCAGGCCAAGGAGCAgcggagagaggaggagaagctgGCTGACATGAGAGATTTGGAATACATACGGAAGAAAATGGAGCGAGAGGCAGAATATGAAGCAGAGCAGAGACGAATCAAGAAAGAGAAGGAGTTGGAGATTGCCAGGCTGAGGGCCcgtcaagaaaaagaaaaagactacAAGGCAGAGCAGGATGAGCTCCGTGCCCGGAGGAATCAAGAAATCGCAGACAGAGAATGGAGGAGAAAACAGAAAGAGCTTGGTGAAAAGAAAGCGAAGGAGGAAGCGATGCTGAGGGCGGCTCGCTTGGAGCAGGTTCACGGGAAAGAGCACTTCCTGTCGATCGAGGCTGGCCGGGAGAAGGCAGAGTTTGAGAGACTGCTGAAGGTGCAACAGGAAGCAATCATCAaacagaaggaggaggaggagaggcagcGTCAGAAAGCACACCGCCACGCAGAGGTAATCCGAAATCAGGTGAAGGAGCGTGAACTCTCAGCCGTAGCCAAGCGCAGAGAGATCTTCAAGGAGGCCGATCGGTTGATCGAGGATGCCCGGCAGAGGCGCGCGCGCCTCGATGAGATCAAAGAGAAGAAGCTGAAGGAGCTCAAGGCTACAGGACTCTCTGAACAGTACTGCAGTGAAGTGGAAAGGAAGGCCCGGGCCTGCGTACTCTAATTCACTCACTACTGGATTCAAATGGTGCGAAGGCATCCCATTTTCTGTGGTCTCATTTAAGCAGAAAGAACACGTTTCAAGTACTAATGTAACTTGAACATATATAAGAATGTACCAATAAAAGGTTTCTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25884 lncRNA downstream 41757 23233513 ~ 23236846 (-) True G18943
XR_005636957.1 lncRNA downstream 44057 23216766 ~ 23234546 (-) True LOC120546850
TU25856 lncRNA downstream 82259 23195668 ~ 23196344 (-) True G18923
TU25842 lncRNA downstream 98020 23178636 ~ 23180583 (-) True G18911
TU25836 lncRNA downstream 102889 23175464 ~ 23175714 (-) True G18905
TU25908 lncRNA upstream 8562 23291741 ~ 23294502 (-) True G18963
TU25969 lncRNA upstream 64258 23347437 ~ 23351424 (-) True G19018
TU25985 lncRNA upstream 170368 23453547 ~ 23461044 (-) False LOC120574680
TU25999 lncRNA upstream 181784 23464963 ~ 23471724 (-) True G19033
TU26000 lncRNA upstream 181784 23464963 ~ 23469720 (-) False G19033
XM_039780884.1 mRNA downstream 109396 23162202 ~ 23169207 (-) True lbhl
XM_039780872.1 mRNA downstream 116525 23159296 ~ 23162078 (-) True LOC120546095
XM_039790989.1 mRNA downstream 396150 22875065 ~ 22882453 (-) True rbm7
XM_039821365.1 mRNA downstream 407013 22860951 ~ 22871590 (-) True barx2
XM_039788880.1 mRNA downstream 479591 22789044 ~ 22799012 (-) True LOC120551448
XM_039782060.1 mRNA upstream 6217 23289396 ~ 23291463 (-) True trappc4
XM_039779525.1 mRNA upstream 31879 23315058 ~ 23341092 (-) True sacs
XM_039779537.1 mRNA upstream 31879 23315058 ~ 23339355 (-) False sacs
XM_039792854.1 mRNA upstream 93915 23377094 ~ 23409078 (-) True LOC120554161
XM_039792823.1 mRNA upstream 126641 23409820 ~ 23446825 (-) False brwd1
TU25890 other downstream 26183 23246603 ~ 23252420 (-) True G18948
TU25812 other downstream 130088 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 130088 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1271432 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1607124 21664095 ~ 21671479 (-) False gdpd5b
XR_005641870.1 other upstream 446309 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 540642 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 964852 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 3023885 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 3037761 26320940 ~ 26334719 (-) False LOC120570356

Expression Profile