RNA id: XM_039782060.1


Basic Information

Item Value
RNA id XM_039782060.1
length 901
RNA type mRNA
GC content 0.44
exon number 5
gene id trappc4
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23289396 ~ 23291463 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTTGTCAGCTGGGCAGGACGTTGCAAAGATGGTGATCTTTAGTGTGTATGTGGTGAACAAGGCTGGAGGTTTAATTTACCAATATGACAATTATGTCCCGAGAGCGGAGGCCGAGAAAACATTTAGCTATCCTTTAGATCTAGTGCTGAAGCACCACGATGAAAAGGTCGTCGTATCGTTTGGACAACGGGACGGAATCAGAGTGGGCCATGCAGTGCTGTCCATCAATGGAGTTGATGTGCttggcaaaaacacagcagacGGAAAGGACACCCTTGAATATTTAAAGGATCCCTCAAATTACCCAGTGTCTATTCGCTTTGGACGGGCACGCCTGAGCTCCAATGAGAAGCTGATGCTGGCATCCATGTTCCACTCGTTGTTTGCTATAGGTTCACAGCTGTCTCCTGACGTTGGCAGTTCAGGGATTGAGATGCTAGAAACGGATGTCTTCAAACTCCACTGCTTCCAGACTCTCACAGGGATAAAGTTCATTGTGCTGGCGGACCCTCGGCAATCTGGTATCGATGCCCTATTGAGGAAGATTTATGAGATCTATTCAGATTTTGCCCTCAAGAACCCGTTTTATTCTCTGGAAATGCCAATCAGGTGTGAACTCTTTGACCAGAATCTGAAGGGTGCACTGGAGATTGCAGAGAAAGCTGGCAACTTTGGAGCTGGATCTTGAGCTAGATAAGACTAGATGGAAGGTGCTATGATTTCTAACCACAACAGATTCACTCACTTCATATGAAGGTGGTTTAAGTTCAggtggtgggggggaaaaaaacaagtggattttcttttttattaagttGGTATCGGACTGGCAATTAACAAATTGTAAATAGTTTGTTTTGTAAATACTTGAAGATTAAATACCATACTGTCTTTAAAA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0005801 cis-Golgi network cellular_component

KEGG:

id description
K20303 TRAPPC4, TRS23; trafficking protein particle complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25884 lncRNA downstream 52550 23233513 ~ 23236846 (-) True G18943
XR_005636957.1 lncRNA downstream 54850 23216766 ~ 23234546 (-) True LOC120546850
TU25856 lncRNA downstream 93052 23195668 ~ 23196344 (-) True G18923
TU25842 lncRNA downstream 108813 23178636 ~ 23180583 (-) True G18911
TU25836 lncRNA downstream 113682 23175464 ~ 23175714 (-) True G18905
TU25908 lncRNA upstream 278 23291741 ~ 23294502 (-) True G18963
TU25969 lncRNA upstream 55974 23347437 ~ 23351424 (-) True G19018
TU25985 lncRNA upstream 162084 23453547 ~ 23461044 (-) False LOC120574680
TU25999 lncRNA upstream 173500 23464963 ~ 23471724 (-) True G19033
TU26000 lncRNA upstream 173500 23464963 ~ 23469720 (-) False G19033
XM_039782027.1 mRNA downstream 5594 23278602 ~ 23283802 (-) True cfap45
XM_039782018.1 mRNA downstream 6217 23278603 ~ 23283179 (-) False cfap45
XM_039780884.1 mRNA downstream 120189 23162202 ~ 23169207 (-) True lbhl
XM_039780872.1 mRNA downstream 127318 23159296 ~ 23162078 (-) True LOC120546095
XM_039790989.1 mRNA downstream 406943 22875065 ~ 22882453 (-) True rbm7
XM_039779525.1 mRNA upstream 23595 23315058 ~ 23341092 (-) True sacs
XM_039779537.1 mRNA upstream 23595 23315058 ~ 23339355 (-) False sacs
XM_039792854.1 mRNA upstream 85631 23377094 ~ 23409078 (-) True LOC120554161
XM_039792823.1 mRNA upstream 118357 23409820 ~ 23446825 (-) False brwd1
XM_039792802.1 mRNA upstream 118357 23409820 ~ 23446825 (-) False brwd1
TU25890 other downstream 36976 23246603 ~ 23252420 (-) True G18948
TU25812 other downstream 140881 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 140881 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1282225 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1617917 21664095 ~ 21671479 (-) False gdpd5b
XR_005641870.1 other upstream 438025 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 532358 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 956568 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 3015601 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 3029477 26320940 ~ 26334719 (-) False LOC120570356

Expression Profile