RNA id: XM_039782537.1


Basic Information

Item Value
RNA id XM_039782537.1
length 2519
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC120547112
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 36909644 ~ 36921917 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttctaatagccttcactggtctccgtccagagcaacggggtctgttggtccattttatatatgtcaatggttttaGCCCTTGTCTGTTAGCTTATGTATCTTCTCCATTTAATTACTGAACGTTCACCTGCATCTGTCTGTAAACCAACATTTAGCCTTGCTTCGACAATAAACTATTATCTTGTCCGAGGTTACCGGGAGTTATACACAAGTTCATACAAAATACAGCTGGGTTTACTGTTTGTTAAGGGTTGCTTTCCCAATTTTCGATGTACATGTCAAGCACtaaatgaaaaagtgaaaaaatcaTCAATTGCTAAACCCATATTATATTTCTAGCCAATAAATTCGATGTTAGACAAGTCCAAAATATGTAAAAGGGATGAATTATTAAATCATCTCCATCCATGTCCATAGTCTGGTCTGCCATTTTGTAAATGATTTTGGAGTGAAAGAAAATCTGTTCATTGAATTATTGACCAGGAGAACATTCTTGCTTTTAATCATCCAtctaagtcatttttttcactGCCCATGTTTTCACAGTGTGTGTTGTTTCAGCTGGCCTTGGCTTAATTCCAGGTCAGCTGTGACCACAGCAAACATTTCTGTCCTTTCCAACCTCCTGGAGAGCAACTAAGACAAGACCAtgagagaaaagacagacaCTCCAGCAAAGGACCTGCATTGGCATCTCATCCTGCAGACATGGAGGGGTTCAGTGAAAAGCTTTTCTGCTGCAGGTGGGTGCGCCACAGGGTTCCCCTGGCCCACAGAGAGGAACTGTACCACATCCTGAAGATGACAGGGCCTCTGCTGCTCTCTCGAATCCTAAATTATCTGCTTCCATTTGTGGTTACAATGTTCTGTGGGCGTTTGGGAAATGAAGTTATGGCTGGCTATGGATTAGCTTCTGCTaccaTTAATATTACCACTGCAGCTACAGGATGTGGTCTGGCACTGGCATGCGATACTTTGGTGTCTCAGACATTTGGTGGTAAGAACCTGCTGCGGGTGGGAGTGATCCTTCAGCGGGGCATCATCATCCTGCTGTTGTTCTGTCTGCCCTGCTGGGCTCTGCTCATTAATGCCCAGGCCGTCCTGTTATGCCTGGGCCAGGACCCTGAGGTGGCCAGAATAGCCCAGCTGTATATAACAGGCTTCCTTCCTGCAGTACCAGCAATGTTTCTACAACATCTCCAGGTGTCTTACCTGCAGAATCAGGGTATAATACTGCCACAAATGTACACTGCTGCCATGGCAAACATAGCAAATGTGATGACGAACTACATCTTTCTTTACTGGCTGGATCTGGGTGTTAGCGGATCTGCAGCAGCCAACACTCTGTCTCAGATTTACATCTGCACTTTTCTGTTTGCTTACATTTGGTGGAAGAAGCTCCATGTAAAGACATGGGGAGgCTGGTCTGTAGAATCACTGCAGGAGTGGGGTTCCTACATGAAACTGGCCATTCCCAGTACATTAATGAAGTGCTTTGAGTGGTGGGTTTATGAGTTTGGTGGATTTGTTGCAGGAATGCTGAGTGAAGATGAGCTGGCAGCCCAACATGCTGTGATGATGGTGGCTTTCATAACATACATGTTCCCTCTTGGTATTCAAGCTGCAGCATGTGCCCGAGTGGGTAATGCTGTCGGTGCAGGAGACACTGCCAGGGCGATCCTCACCAGCAAGATGTCATTAGCGCTTGCAGGTAGCATTGCAGTTGTTGAAGGTATTGTGCTTGGCGCTACTAAATCAGTGATTGGCTTCATCTTCACCTCTGATGTGAAGATCATAGGTCTAGTCTCACACTTGATGAATGCTCACTGTTTCCTTCAGTTCTTTGATGCTCTTGTGTGTGTGTGCACAGGCATCTTCTTGGGCACGGGCAAACAGAAGATACCAGCTCTGGCCAATTTCATTGGATACTACTGCATAGGACTTTCACTGAGCGTTACTTTAACGTTTGTTGCAAAACTGAGAATTTTAGGTTTTTGGCTGGGATTGCTCGTTTGTGTCATTTTACAATCCACCTTCTACATCATTGTCATCTTCAATCTGAACTGGGAGAGAATGACAGAGGAGgcTGTTAACCGAGCACAGATCAACACGCCTATGACATTATTAAGCACAGCTGCCCTGTCAGACGCTTTCTGTAACAACACTGCTGACCAGACAGAGAGCAATGGGAATTCAGTTGAAGGCTACGAGTCTGTGAGCGCCGAGTGCCATTATGGGAAGATGAAGACACAGGGGGGACATGTTGTCCAGCAGCTGAAGGGTTGTCGTCTCTCCACTACCCAGCTGATCCTCAGGCGAGGCCTCACTATGTTTGCAGCAGTTGCACTTCTGGCTGTGGGAGCAAGTGTGCACTTCCTTGTGCCTTTGCCAGAAACCCTGCCTTCAGAGGCCAACTTTACTTTGGACTGGATCAATACGACATATACTCCTGATCAGATTTTTACCACTGTCTTTAATTCGACTTATTCTCTTTGACAGACTGGGCTGTGAGCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30045 lncRNA downstream 218992 36687896 ~ 36690652 (-) True G22074
TU30043 lncRNA downstream 427457 36481831 ~ 36482187 (-) True G22072
TU30039 lncRNA downstream 445416 36462987 ~ 36464228 (-) True G22068
TU30038 lncRNA downstream 446876 36461781 ~ 36462768 (-) True G22067
TU30040 lncRNA downstream 448425 36460736 ~ 36461219 (-) False dph1
TU30157 lncRNA upstream 44041 36965958 ~ 36968564 (-) True G22169
TU30165 lncRNA upstream 179012 37100929 ~ 37101140 (-) True G22176
TU30170 lncRNA upstream 184352 37106269 ~ 37106646 (-) True G22181
TU30164 lncRNA upstream 190279 37112196 ~ 37123100 (-) False kiaa0753
TU30219 lncRNA upstream 288282 37210199 ~ 37212192 (-) True G22217
XM_039818897.1 mRNA downstream 80176 36812622 ~ 36829468 (-) True wdr81
XM_039789268.1 mRNA downstream 97162 36809696 ~ 36812482 (-) True serpinf2b
XM_039818908.1 mRNA downstream 101367 36775424 ~ 36808277 (-) True rpa1
XM_039824410.1 mRNA downstream 359530 36460679 ~ 36550114 (-) False dph1
XM_039778747.1 mRNA upstream 63135 36985052 ~ 37097798 (-) False pitpnm3
XM_039778732.1 mRNA upstream 63135 36985052 ~ 37097798 (-) True pitpnm3
XM_039778738.1 mRNA upstream 63135 36985052 ~ 37097797 (-) False pitpnm3
XM_039786579.1 mRNA upstream 190279 37112196 ~ 37135841 (-) False kiaa0753
XM_039786587.1 mRNA upstream 190279 37112196 ~ 37135841 (-) False kiaa0753
XR_005641838.1 other downstream 359530 36460680 ~ 36550114 (-) False dph1
TU29998 other downstream 579235 36318773 ~ 36330409 (-) False taok1a
unassigned_transcript_104 other downstream 1862695 35046878 ~ 35046949 (-) True trnap-cgg
TU29485 other downstream 2427611 34481458 ~ 34482033 (-) True G21674
TU29436 other downstream 2811303 34094562 ~ 34098341 (-) False LOC120548089
TU30252 other upstream 342656 37264573 ~ 37269320 (-) True G22245
XR_005636371.1 other upstream 729542 37651459 ~ 37655795 (-) True si:ch211-105f12.2
XR_005637810.1 other upstream 812948 37734865 ~ 37746270 (-) False p4ha3
TU30601 other upstream 1431143 38353060 ~ 38363688 (-) False robo2
XR_005641089.1 other upstream 1807024 38728941 ~ 38735823 (-) False LOC120570635

Expression Profile