RNA id: XM_039782690.1


Basic Information

Item Value
RNA id XM_039782690.1
length 6342
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC120547208
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16190131 ~ 16208976 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTACAAGTGGCTGCGGTCTGCACCACAAACCGAGACGCATGACCAATGAGCTCTCTCTTGCGCACGTACCCAGATTTCAGTTAACAGTGATCATTGGTGTATATGCACGACTTTAAAGCTCAGCAGCTCAGATAAGTTGGTGACCATAGTGGAAACGGTGCAAGATGGGCAAACAAGCTGGAAGGCAGTGCGGGTGCTTAGTTTTCTGAGAACAAAAGCGGCGCTCCGTGCCATTGCGCACAACTTCTTTATTGCATGCAAACGCACCAAAGCCGAATTACTGAGTAGAATTTCCTGAGCAGAAGCAAATATGGATATGCTTAGTTCTTTGATTATTTTCACAAAGTTTCTACTTTATTTGAAACTAACATATTGCATGGAGGTAGATTTCTGCATACCTGTTCGTGTGGATCATCAAAAGCATGAAAAGCATCTGCACCGGCGCGCGGAGCAGATGACTGAAAGACTAATAGTTTTTAGACTAAGTGCATTCAAACAGGAACTTTACCTCCACCTTACGCCGGATTCCAGTTTTCTTGAACCGAGCAGCTTGACGCCTGAAAGCGGCTCCTCAGCATCCAACGCCTCTGCAACAGCTGACTTACGGGAATGCTTCTACTCCGGGGATGTCAACGCCGAACCGGACTCCTACGCCGCGCTCAGCCTGTGTAAAGGTCTCCATGGGAGTTTTTCCTATAACGGCATGGAGTATTTCATCAGCCAGAGCAGAACTGAAGACGCAGCAGCTGCGTCTGGAAATGGAAACTCTTTCGACAGGACGCATGTCGTCCGCCGCCGAAGACGCGCTACGCACTCAGGCGGCAACTTCACCAGCAGGTGTGGAGTTGCACCTGACACCAACTTCAACATTTCCCTGGAGAAATACAAGCACATCAGTGAACTGGCGATTGATGGCTTTACTGAAACTGTGTTGAAAACCTTGGGGAGGTCCAAGAGGTTTGCCTCCATCCCCAGGTTTGTGGAGGTGCTTGTGGTGGCAGATGAATCTATGGCTAAATTTCACGGGGATGACCTAAAGCATTACCTCCTGACCCTGATGTCAGTAGCAGCCAGGCTTTACAAGCACCCCAGCATTCTCAACTCCATAAACATAGTGGTGGTGGGTTTCATGGTCATAAATGAAGCTGACAAGGGACCCAAGGTTTCCAGTAATGCAGCCCTGACTCTGCGCAACTTCTGCTCCTGGCAGAAGAAGTTGAATAAACACAGCGACAAGCACCCAGAATACTGGGACACTGCCATACTGTTCACCAAACAGGATCTTTGCGGGGCCACAACCTGTGATACACTGGGTATGGCTGACGTTGGAACCATGTGTGACCCGAAGAGGAGCTGCTCTGTCATTGAAGATGATGGCTTGCCCTCCGCTTTCACAGCTGCCCACGAACTTGGCCACGTCTTCAACATGCCCCACGACAATGTGAAGGCGTGTGAGGAGGTATTTGGGAAACTAAAGGACAACCACATGATGTCTCCCACACTGATTCAGATCGACAGGAGCAGGCCCTGGTCTGTGTGCAGCGCagccatcattactgagttccTGGACAGAGGTCATGGAGACTGTCTGTTGGACCAACCTCAAAGGCAGCTGTCTCTCTCAGACAACCTGCCTGGTTCCAGCTACAGCCTGCACCGCCAGTGTGAGCTTGCTTTCGGCCCCGGCTCCAAGCCCTGCCCGTACATGCAGCCCTGCTCCAAGCTGTGGTGCACCGGGAAGGCCCGCGGCCAGTTGGTCTGTCAAACCCGACACTTCCCCTGGGCGGACGGCACCAGCTGTGGCAACGGCAAGGTCTGCTACCGAGGAGCCTGCACTGATAAGAACAACACCATGCACATCAAGGTGGATGGCCGGTGGGGGAAGTGGGGAGCATTTGGAGACTGTTCCCGAAGTTGTGATGGAGGAGTTCAGCTGGCAAAGAGGGAGTGTGACAACCCTGTTCCTGAGAATGGAGGCAAATACTGCTATGGCCTTCGCATCAAGTATCGCTCCTGTAACTTCAACCCTTGTCCTGAAACAGGCAAGAGTTTCCGTGAGGAGCAGTGTGAGGCGTTTAATGGCTTAAACCTCAACACCAACAGACTAGGTTCCTCTGTGGTTTGGGTTCCTAAATATTCGGGCATCTCTCCCAAAGACAAATGCAAGCTTATCTGCCGCGCCAACGGGACTGGGTACTTCTATGTCCTCGCTCCAAAGGTTGTGGATGGGACGCCCTGCTCTCCTGACACCTCAGCTGTATGTGTTCAAGGAAAATGCATCAAGGCAGGCTGTGATGGCAAGCTGGACTCTAACAGGAAGTTTGAcaagtgtggtgtgtgtggtggcgACAACCAGGGCTGCAAGAAGGTCTCAGGATTGTTCACCAAACCTATTCATGGCTACAACTTTGTGGTGATGCTGCCTGTTGGAGCTTCCAACATTGACGTCCGTCAGCGTGGCTACCGAGGAATGGTCAGCGATGAAAACTACTTAGCAGTGAAGAATCGGCACGGCAAGTACCTGCTGAACGGAAACTACGTGGTGTCAGCCGTGGAGCGCGACTTGCTAGTGAAGGGCAGCTTACTGCGCTACAGCGGCACCTCCTCATCCGTGGAGATTCTTCAGGCCACCAGACCCCTGCAGGAACCTCTGACTGTGGAGGTGCTCTCAGTAGGGAAGATGACTCCTCCCAGGGTGCGCTACTCTTTCTACATCACCAAGGAGAGCAAAGAACAGAAGACTCTGCGGAAAGAGGAGAAAAGCCACACCACGCATAATAGTGTCTTGGCGGACAGTAATAGAGTAGAAGCTAAGACGCCGATGATGGGTAAGAGGCCGGTCAGTCATTGGGTGACAGGAGCTTGGGATTCGTGCACAGTGACTTGTGGGAATGGTCTGCAGAAGAGGCTGGTGCAGTGCCAGAGCATGGAGGGGCGTCCTGCAGTAGACTGTGACAGTGCTGACAGGCCTGTAGCAGTGAGAGCATGTGGTGAACCATGTCCCATGTGGGATGTAGGGGCCTGGTCTCACTGCTCCAAGTCCTGTGGAAGGGGCTTTAAAAGGCGGCCAGTGCGCTGCATGACTGAGAATGGTCTAAATCTACCCAGAGACCACTGCTCTGGAAGGAGGAAGCCTCAGGAACTGGACCTCTGCAATCTGAAGCCATGTTAAAGCAGAAGAGACACAACCAAAGGACTTATTTTTGTCAGTCAAAGTGACAATTTGCCCAAATCAGCATGATAATGATCCCACAGCTGTGTTGGGTGGAAATACTCTCAAACGCAGCCTGACTGTGTCTGAAGGGGCGTCTGCTACACTGAAGAAAGCaaatggagacagagagggtcTCCCTCTATTGTATGAAAAGACATATATCAGTTTagataaaagaaaagaatgaaAGCTGTCTTCTTGTAAACTGTCAAACCATCTGCCTCAGTTTTGACTTGTGGTTAGTCTACCTCTATCAGGAAAGATGACACAATGCCTGAACATATACAGAGAGTAACAGAGGAGAAagatgcagagacacacacatctgcACACAAACATAATTTCTTGGTAAAGTTACCTGCCTGGGATGAAATTGCAAAAGCAGAGAGAagtccagacagacagacaaagcatGTTGAGGTATAATCTCAGCACTCACACTGTGCATTATCACAAGCAGATATCTCACCTGTGAATTGACATTGTTCTCTTTTCACTGAAGACCTAATCAAAATGTGAAAGACAGTACTGTAACATTCTTGCACCATTCAAGACCTGATTGGTCCATGCAGTTTCTGCATCTTTTTTGTAACTTGTCTTGATTCAGTGCTGTGGCTGTTGTCTGATGTAGAATAATCAAAGCCAGCAGCCAATCACACTGCCAGTCAGAGTCAGATCATAGTTTTACAAGCTTTATATCcttacaaaatgaaaaacagacaATATATTACGCACCTGATACAATCTTCATGAATTAGATCACTATCAAAGAACTGAATTTTACCCGCgaccaaaaaagtaaaaatattttttataagaGGAAAATAAGTTTAGAGTTAAGATGTTAGCATATTATATCCAGTGAATGTAGGCTGTTTGTATGGTGCAATCATAATGCGTCTTTGTCCGTTTTGTGTAAACTAAATGCAATGCTCCTGTTTGTTCTGTTGCCAAAGAATTATAACCTTTCAAAAAGCCTTAGTACTTTGAGACACGTCTCTGATGGAACTTCTTTTGTTTGCTACAACATatacacaattgttttttttatatgattttttttttttcgttgagaaaaaactaaaaccaaaagggacaaattaattaattagttttggttttatgatGGCGCCCTCCTAGTTTTGCATTTATTCAACGGAATGccgttaaattaaaattaaatcttGCATAAAGCATTAATGTCAGTGTTCAATCATGGGCATGGCAGACGGTTACACTGAGCCAGACAGCAACCTGTTCCACAACACAAGATATTCAGACTCTGATCAACAACTACATTAGCTGTCCTGCTCGGGGAAAAGAGCACTGCTAACGTCAGTGTGTGCAGACTAATTAGCTAATTATCTGCTCAGCACATTAAACAGCATGTGAACGCAAAAGCCACCCGGGTCCAGTTAAATGCTGCTGTGCTCCTTACGGTTCAATACCAGTAACAACACACTGTCTGTCCATTACATGAAGACTACAGCACTACAAGTTTGTTTACTTTGTCTCTCGTTCTTTATGGTGTAGTcccgctttgccagaccttccttcacagcgctgcggcTTACGGTGTAACACCGGCACTCTGGCAGCTTGCCAAAGCAAtctgaggatgtcatcttgggttctaggaaattgtgatggacatttcttttttactaTTTCCTAAGACTTTATAGATCAAACGATTGAGGTTTGAAGTTTGCGCCTTCATGAAAAAAGGAGGTTGTTGTCAGTTTTGAAGAAGGTATTGATCTAGATTTCTCAAACTGTAGATGTAGCATATACTGAGTATCTATGTTCACTAGGTTATATTCCTTACAGTAATTGATTAGattagcaataataataataataataataataataggggTTTATTCATAGAGTCCTTTTCTAGTAAAACGCAAAGTGCTTCCCAGTTAGAAAGATATAAGACAATGGCAGGACCTTAGCAGCATTTAAACAGTTAAAAATCAGCAAACAACATAATACATAGCAGTAGtagaaaatacaaaaagacttaaacatacatacaatcaattaaataaaacgTTCCCAATTACAGACATTGGCTATGCAAAAGgcataaagaaagaaaactatTAGTATTAGTGGTTTAAgacaaagaaacaagacataacaACAATCTAGGCATTAATATTGTTAAATGAATACTCGGTTTTCAGGTAATGCGGTTGCCCTCCTCAAAGCTCCATGAATACAATGCATGTTGGCTTGTGGCATCGCCTCAGCTTTCACAGTCTTTTGTCCTGCTGCTGCATAGCAGCTTCATCATCTCTTGCCCTTAATGACATATTGCAACATGCCAGCCTatcattatacattatactGCCCGAAATGTATATGGTTTGATCATTTGCTCAGGTGTTACACTCATTCTCGTTCTCACACTTATTTAGTGAACTGTTTCAGAAAAAGGATGTTCttctctatccatccatccatggtgAAATTAAAGGAACAATTCTCcctaaaacacaatcaaacaccTATTGTTGTATATCATGGCATtccagtttgttgttttgtagGGACTGATTTTATTCCATTGGATAAATGTTGCTGCATTTTTAACACAGCTGAAAATATGCATGCTCGCAGCAGTCTTAAAAATACTTGGTAAAAGTCCAGTTTTGCTGTCACGCCCTAAGATTTGAAGTGCAAGGGCGTCTGTCTGGACCATTTGACATGTTTACAATGTTCATtaataaaaagacagaaatgtaCTAAAAGAAATGAATTCCATCATCTATGCTATTATAACTTTCAACACTTCCAATGTCAACACTCTTAATGAAACAACACGTGGAATGCATCAAATATCGCAGAATAatagatttgtatttgtatttgaagGTGGTCctttaaaatgccaaaaatgccaaCATGTCcttcaacaaaaaaatgtattacactCTTAATTTCCAGTTGGATTTGGTTCAGATGACCTACCATTCAAAAGATGGCACTGTACAgttagtttttctttctttcacatcatggtaatgttgttgttttttaatcagtTGTCTTTTGTATTGTATACTATGTATACATTCATCTAGctgtataaaataaagaatgtatatatataagattA

Function

GO: NA

KEGG:

id description
K08629 ADAMTS15; a disintegrin and metalloproteinase with thrombospondin motifs 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23748 lncRNA downstream 142115 16016922 ~ 16048016 (-) True G17389
TU23597 lncRNA downstream 471090 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA downstream 476042 15713132 ~ 15714089 (-) True LOC120549843
TU23562 lncRNA downstream 539131 15646740 ~ 15651000 (-) False lyrm9
TU23849 lncRNA upstream 191647 16400623 ~ 16400836 (-) True G17466
TU23886 lncRNA upstream 208319 16417295 ~ 16418742 (-) True G17499
TU24024 lncRNA upstream 487837 16696813 ~ 16698009 (-) True G17571
TU24054 lncRNA upstream 501793 16710769 ~ 16766469 (-) True G17579
TU24067 lncRNA upstream 511242 16720218 ~ 16935713 (-) True G17583
XM_039792939.1 mRNA downstream 117228 16064444 ~ 16072903 (-) False il4i1
XM_039792930.1 mRNA downstream 117244 16064444 ~ 16072887 (-) False il4i1
XM_039792921.1 mRNA downstream 117325 16064444 ~ 16072806 (-) False il4i1
XM_039792946.1 mRNA downstream 117327 16064444 ~ 16072804 (-) True il4i1
XM_039784527.1 mRNA downstream 129723 16049876 ~ 16060408 (-) True sdhdb
XM_039792526.1 mRNA upstream 110521 16319497 ~ 16336625 (-) True LOC120553834
XM_039784419.1 mRNA upstream 172367 16381343 ~ 16386068 (-) True atf5b
XM_039791847.1 mRNA upstream 232121 16441097 ~ 16560068 (-) False phldb1b
XM_039791880.1 mRNA upstream 232121 16441097 ~ 16549250 (-) True phldb1b
XM_039791889.1 mRNA upstream 232121 16441097 ~ 16543623 (-) False phldb1b
XR_005637173.1 other downstream 129723 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 129723 16049872 ~ 16060408 (-) False sdhdb
TU23600 other downstream 475868 15695554 ~ 15714263 (-) False G17287
TU23589 other downstream 475868 15702609 ~ 15714263 (-) True G17287
TU23599 other downstream 483676 15695554 ~ 15706455 (-) False G17287
TU24093 other upstream 639185 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 1264760 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 1923111 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 1996606 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 3593737 19802713 ~ 19810130 (-) False si:ch211-11n16.2

Expression Profile