RNA id: XR_005637072.1


Basic Information

Item Value
RNA id XR_005637072.1
length 2367
RNA type transcript
GC content 0.50
exon number 9
gene id srsf7a
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12654605 ~ 12662190 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAGATTGTGGGGTTGTATTCTATCCAGGAAATTCTGGTGGTGGTTAGCTGTTAGCTGGTCGAACTGTGCGACAGACATGTGGAAGACTTGTTAATGTCCACGAGTGGCTATTTAGCTAGTtcattcagcaaaaaaaaaatagtcgtTTATTCGTTCAAAGCCACCTCGGGCTTCTGTTTGAGGCGGTTGAATTTCACCTGCGTGTAGCTGAATCAGAAATCATCGGAACAGCGGAacaagGCAAGGAGAGATGTCCCACTATTCGTCTTCCCGTAGTTCGTCTCGGGCGACCGACTGTAAAGTGTACGTGGGTGATTTGGGCAACGGTGCTGCCAAGGGGGAGCTGGAGCGAGCATTCAGTTATTATGGCCCGCTGAGAACTGTCTGGGTGGCCCGAAACCCACCTGGCTTTGCCTTTGTGGAGTTTGAGGATGCCAGAGATGCAGAAGATGCTGTGAAAGGCATGGATGGAAAGGTCCTTTGTGGTTCCCGTGTTCGCGTGGAGCTGTCAACGGGCCTCTCCAGGAAGGGCCGTGGGCGCCCCAGCCGACGCCAGTTCGACCCCAATGATCGGTGTTACCAGTGTGGGGACCGGGGCCACTATGCCTACGACTGCTACCGCTTTAGCAAGCGCGGAGGCCGTCGCAGCAGGTCTCGATCTCACTCCAGGTCTAGGTCCAGGTCCCGCGGGCGCCGTTATCGCTCTCGCTCCCACAGCCGTAGCCGTAGCCACAGCCGGAGCCGTCGTCGATCTCCATCCTATTCCAGACGCAGGAGCAGGTCTGGCTCTCCAGCCCGTTCCAAGTCCAGGACTCCAGTGAGAAGtCGTTCCAGATCTCGGTCCGGCTCTGCGCCCAGACGACGCTCTCCCTCCCGATCTCGCTCACGATCTCCAGCAGCCAATCACAAGAGGAACAGCGTGTGGTGGGAGCTGAGCACCGCACTGACACCACAGCTGATCCCAGGCCCAGGGTCTGCCAGCTGGCGGTGTGTACGTCCTGCGGGAGGGTGACTAAGCGCTGACCTGAGATCAGCCTTCGTCTGCATCTGGTGTTAGACAGCGAGAAAGAGGTCGACCTACCGACCGAACCCTCCCCACAGTAAATGGGTGACCGTCTGTTCAACCGACGCACACGCTAAGACGAGATCAGCCCGTGCACACATACAGTTGTTCTACTAGAGTTCTACTAGAGTCACCCAGCCAGCCAGCCTTCAGATGTACCAGAGGGCTGACCCACACAGATCAGAGTTCGACCGCTACCTTTTTAAATCCATTACCTACCTACCAGACCCCCCTACCTACCAGAGTTCTTCGGCCTCTGTCTTAGCTTCTGAAAGAGAGCTGACGAGAGATCAGTCTTCAAGAGCCTCCCAGCGCAGTGTCTCTCCGAGTTGTAGTCGTCCGTCCTACAGTCCTTTCATCCTTCGCTTCTCTGTACTTGTTGTTTCTGCCACTGTCTCCAAAGTCGTTCCCGTACAGCAAGTCCACACCGAAGCCCCACGCCGGCAGACGACTGAGTGAAGAAGACTTATTAGTTCCTTAACAGACAGACCCTCTACTCTGCACCCCGTCTGCTTTCACAGCCCTACAGCAGCTGTTTTTTGTACTTTGTCTGTTTAGTCCCAgtcttttttaagattatttttctcCCCAGGACTAGTAGTCTTCGTGCAGCCTCAGATTGTTGAAGAATTAGTCAGTTTAGCAGACAAAATCAGTTTCCATTTGATAGAAAGTGTACTGCTGTTGCATaggtcctctttcttctctgaAGACGCGTGCTGTAGCAAGTGTAAGAAGCAACACCTGTGTTAAGGTGATACTGAATGTTGCCATTGGCTTTTAGCAGTGATATGAGTAGCTTGTACAGTACACTTTCTGTGGAAGATAGCCCAGTTGATGCAGCGTTTGAGAGTGAAGACATTGCATTGAAAACTGCTTTTATTCCCTAAAATTTCTAAACCATCAAAATATTTTCCCCATTGAGAATCggcaaacaattttttttttttttgtattgctcTCCAATTTGAATTTTTAGGTTAAGCTGCCGTTTAATGTTTCCACTCATGATGGCATAAGGAGGTAGTTGCTGGCCTGCATGCCTTTGAATATGTAGTCACATTCCTGTTTGTTGTTTCTGTGCTGCACTGCCCCCTTTTATGAACCTCATCAGCTTTACGGTGTGCTGAATGGATTTTCCCCATGTGTTGAATCTCCGATTTTGTTtgacttttaattttaaaaaaaatacagtgctGAAGTTTGATTTCTGTAAGGGCTGCTTTAACAGTTTTGTTCTGTTCCTGGCTTATACTGTAAGACAGTGGCAGTTTCAGTTTTGAATAAACCCCTTCAACGTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22712 lncRNA downstream 24690 12629572 ~ 12629915 (-) False LOC120544465
TU22555 lncRNA downstream 78022 12576233 ~ 12576583 (-) True G16554
TU22527 lncRNA downstream 210596 12443629 ~ 12444009 (-) True G16531
TU22524 lncRNA downstream 238692 12413484 ~ 12415913 (-) True G16528
TU22518 lncRNA downstream 259768 12394490 ~ 12394837 (-) True G16525
TU22720 lncRNA upstream 2009 12664199 ~ 12678548 (-) False slc8a2b
TU22721 lncRNA upstream 160239 12822429 ~ 12822922 (-) True G16676
TU22725 lncRNA upstream 206691 12868881 ~ 12911173 (-) True G16678
TU22744 lncRNA upstream 353435 13015625 ~ 13137068 (-) False G16688
TU22746 lncRNA upstream 353435 13015625 ~ 13137068 (-) False G16688
XM_039778254.1 mRNA downstream 3530 12637723 ~ 12651075 (-) False LOC120544471
XM_039778279.1 mRNA downstream 3532 12637166 ~ 12651073 (-) True LOC120544471
XM_039778261.1 mRNA downstream 6071 12637166 ~ 12648534 (-) False LOC120544471
XM_039778271.1 mRNA downstream 6071 12637166 ~ 12648534 (-) False LOC120544471
XM_039778242.1 mRNA downstream 24513 12625965 ~ 12630092 (-) True LOC120544465
XM_039779394.1 mRNA upstream 2009 12664199 ~ 12855727 (-) True slc8a2b
XM_039779404.1 mRNA upstream 2009 12664199 ~ 12855713 (-) False slc8a2b
XM_039785128.1 mRNA upstream 214397 12876587 ~ 12907961 (-) False LOC120548705
XM_039785122.1 mRNA upstream 214397 12876587 ~ 12907961 (-) True LOC120548705
XM_039823070.1 mRNA upstream 249308 12911498 ~ 12983519 (-) False actn4
XR_005638514.1 other downstream 88560 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 89713 12564729 ~ 12564892 (-) True LOC120554484
XR_005638508.1 other downstream 92106 12562309 ~ 12562499 (-) True LOC120554559
XR_005638463.1 other downstream 93159 12561283 ~ 12561446 (-) True LOC120554479
XR_005638505.1 other downstream 97805 12556610 ~ 12556800 (-) True LOC120554546
unassigned_transcript_89 other upstream 336777 12998967 ~ 12999039 (-) True trnak-uuu_3
unassigned_transcript_91 other upstream 342027 13004217 ~ 13004289 (-) True trnak-uuu_5
TU22775 other upstream 586413 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 660678 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 1000717 13662907 ~ 13754616 (-) False si:ch211-14c7.2

Expression Profile