RNA id: XM_039783537.1


Basic Information

Item Value
RNA id XM_039783537.1
length 2858
RNA type mRNA
GC content 0.54
exon number 22
gene id eml2
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 14166113 ~ 14203307 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGTAAAGGTGTATGTGTTCGTGTTGCTTATGAATGTGGGGGAGACAGGAAGAGGCGACGGCGTGAAGAAGAGACGGAGAGGGGGTCGAAGGAGGACAAAGAAGGACCCGGCCGAGAGGAGGAAGAGctggaaagaaagaaggaacgCGAGAAGAGGGAAGGATGTCGGAGAGGATGGCTTCGTGTGGGAGCCTGTATGACAGCACCAACCTGCTGCTACAGTACTGCAACAACGATGACACGGTGTCGGCTGGCAGTAACATGGACATGGAGGACCGGGTTTCCCACCTGGAGCAgaagctgcagctgcaggaggaTGAGATCCAGCTGTTGAAGGCAGCTCTGGCTGATGCCCTGCGCCGACTGGGTTGCTGTGAGGAGCAGAGCCTGGGGATGCAACCTGGAGGCGTCCATGCTGCTGGGAGGAGATCTCTGGCTACCACAGCTTCAGCAACACCTAGCAAGGGTAAGAAAGTGCGTCAGCTCCTGCAGGCTCTTCCCTCCAGACCTCTGAGTAATGGCTACGTTCAACAGAAacgcctcctctcctccccttcctctcctAAGAAGGAGGTGCTACAGTCCATTAAGAGGAAGAGTATGTCCACAGAGCGTCTCACCATGGTGAGGAGAGACATGGGAGCGGAGAGTCGGAGTCGAACCACCTCTTCCAGCAGCTCCTCCGGAGGCAAAGGcaAATCCAAAGAATGCACCCTCAATTCAGAGGACGGCTACGTGAGGATGTTCCTCCGAGGTCGTCCGGTCACCATGCAGATCCCCGATAAGCAGAGGGAGAGCTACAGCCTCGACCACAAGGTGGCGCTACCTGACCGCAAGCTCAAACTGCAGTGGGTGTACGGCTACCGCGGACGTGACTGCCGCTCCAACCTCTACCTGCTGCCCACGGGAGAGATCGTCTACTTCAACGCctctgtggtggtgctgtacaACAccgaggagcagcagcagagacactACATGGGCCACAACGACGATGTCAAATGCCTGAGTGTGCATCCTGACATGGTTACCATAGCAACGGGGCAAGTGGCTGGAAACTCTAAGGATGGAAAgCTGCTGGCTCCTCATGTTCGTGTTTGGGACTCTGTGAGCCTCAACACGCTTCATGTGATCGGGATGGGAGTGTTCGACAGAGCGGTCACTTGTGTGGCTTTCTCCAAGTCGAACGGCGGCACCTTCCTTTGCGCTGTGGACGATGCCAACGATCACATCCTGTCGGTCTGGAACTGGCAGAAGGAAAAGCAATTGGCTGAAGTCAAGTGCTCCAATGACTCTGTACTGGGCTCTGTGTTTCATCCCATGGATGCCAACCTGATTGTCACCTGTGGAAAATCTCACATCAACTTCTGGACCATGGAAGGAAACACTCTCACCAAGAAACAGGGCCTGTTCGAGAAACACGAGAAGCCGaagtatgtgttgtgtgtggcgTTTGCCGAGAATGGAGACGCCATCACAGGAGACTCCAGTGGAAACCTCTACGTCTGGGCCAAAGGTGGTAGCCGCATCAGCCAGGTGGTGTCGGGGGCCCACGAGGGCGGGattttctctgtttgtgtccTGAAGGACGGCACCATGGTGTCTGGAGGAGGGAAGGACCGCAAGGTGGTGCTGTGGGACCACGACTACAGAAAGAAGGCCGAGATGGAGGTGGGCGAGACGCTCGGCCCTGTACGGGCTCTGGCTGAAGGTAAACCTGGAGAGCTCTTTGTAGGAACCACCAAGAATGCCATCATCAGAGCTGCCTTCCCTGATACATTAACTCCTATTGtacagGGTCACACAGATGAACTGTGGGGTCTGGACACCCATCCCTCCATGGAGCAGTTTGTCACCTGTGCCCAGGACAAAGTGGTTCACCTGTGGGACACCAACTCCCATCAGCCCCTCTGGAGCAAGACCATTGAGGATCCAGGGAGGTGTGCAGGTTTCCATCCCAGCGGGGCTGTTCTGGCTGTGGGGACCATGACTGGAAGGTGGTTGGTGCTGGACACTGACACCCGGGATCTGGTTTCTATGCACACAGACGGCAACGAGATCATTTCCGACGTCAAGTATTCTCCAGATGGTAACTTCCTGGCTGTTGCTTCCCATGACAACTTTGTTTACATCTATGCTGTGACGGAGAATGGCCGAAAGTACAGCCGTGTGGGGAAATGCACTGGCCACTCCAGCTTTGTCACCCATCTGGACTGGTCGGTAGACAGCCAGTACCTCGTCACCAACTCAGGAGACTACGAAATCCTCTTCTgggaggCATCCAGTGGTAAACATGTAACCAACATGGACAGAGTACGCAACCAGGAGTGGGCCACTTCTACCTGCACTCTGAGCTTCACAAccttcgGAATTTGGCCAGATGGAGCAGACGGCACAGACATCAACGCCGTGTGCAGGTCACATGACGGATCCCTATTGGCCTCTGCTGATGACTTTGGCAAAGTGCACTTGTTCTCCTTCCCCTGCTCTCAACCAAGGGCTCCGAGCCACGAGTACGGTGGCCACAGCAGTCACGTGACCAACGTTGCCTTCCTGCACGACAACAGTCACCTGATCTCCACTGGTGGGAAAGACACCAGCATCTTGCAGTGGGTGGTCTAGGCAATGGTACCCACCCACATCTCTAATCGCCCACATGGGGACCAGCGTCCTCTCTGACCCCTGCCACCTCTTCACTGTTTTACCCTCATGCCACCAGGGGGCAGTATCTCCACTGTGCTTActggaaataataataaataaataaaaacacacacacacaacttacctacatactgtatgtcacacCAGATAAGATCATGAGTATCATTGTAATAAATTGAATATTATTTAGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23134 lncRNA downstream 25680 14138726 ~ 14140433 (-) True G16933
TU23080 lncRNA downstream 149642 13951061 ~ 14016471 (-) False G16894
TU23081 lncRNA downstream 184499 13951061 ~ 13981614 (-) True G16894
TU23088 lncRNA downstream 237399 13928343 ~ 13928714 (-) True G16898
TU23069 lncRNA downstream 258083 13905904 ~ 13908030 (-) True G16889
TU23145 lncRNA upstream 10543 14213848 ~ 14215714 (-) True G16942
TU23170 lncRNA upstream 44623 14247928 ~ 14249738 (-) False caln1
TU23171 lncRNA upstream 44623 14247928 ~ 14249668 (-) False caln1
TU23172 lncRNA upstream 44717 14248022 ~ 14249668 (-) False caln1
XR_005637815.1 lncRNA upstream 317461 14520766 ~ 14523356 (-) True LOC120551036
XM_039787130.1 mRNA downstream 79356 14078577 ~ 14086757 (-) True gpr4
XM_039822643.1 mRNA downstream 121281 13959770 ~ 14044832 (-) False nova2
XM_039822634.1 mRNA downstream 121282 13959770 ~ 14044831 (-) True nova2
XM_039783199.1 mRNA downstream 253487 13908129 ~ 13912626 (-) True irf2bp1
XM_039791720.1 mRNA downstream 266209 13895034 ~ 13899904 (-) True foxa3
XM_039790840.1 mRNA upstream 45387 14248692 ~ 14322833 (-) True caln1
XM_039790833.1 mRNA upstream 45387 14248692 ~ 14320549 (-) False caln1
XM_039778448.1 mRNA upstream 82418 14285723 ~ 14286550 (-) True LOC120544580
XM_039784191.1 mRNA upstream 140814 14344119 ~ 14415376 (-) False tyw1
XM_039784200.1 mRNA upstream 141569 14344874 ~ 14415378 (-) True tyw1
TU23133 other downstream 79349 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 343056 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 411497 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other downstream 458073 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 830974 13322868 ~ 13335139 (-) False sae1
XR_005641363.1 other upstream 1115535 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 1492249 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 1492249 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 1499304 15702609 ~ 15714263 (-) True G17287
XR_005637173.1 other upstream 1842703 16046008 ~ 16060408 (-) False sdhdb

Expression Profile