RNA id: XM_039783809.1


Basic Information

Item Value
RNA id XM_039783809.1
length 7098
RNA type mRNA
GC content 0.50
exon number 31
gene id c2cd3
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 37709784 ~ 37730742 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTTGCTCGGAAACCATACTGGAAAGTCGGAAACAGATTTGCGCGCTGccgtttgtatgcgtgtgtgggtgtgtgtgcagctCAATCGGCTCTGTTAAACGGATTATTAGTTGGATAGAGTGTGATAAAAACATGCCCGCTAACGGTTCACACCCGGCTTTGGCAAGGTTGTCATTtataacctagctagctagctagctatacgtACTGAGCTGCGGAATGAAGAGCAGAAAACAGAGGTCCGTCAAAGCTGGAGCCAGCAAAAAGAAAGTCACAAGCGATGTGTCCCCCGCCACCAGCCTCCCTCCTCTGGTCGAAGGCCAGCTAAGATGCTTCCTGCGGGTGATTATAAGCCGTGTATTATGGACAGTTCAGAAGCCTCCGTCTGCAACATTTGTGAGGCTGCGCTGGTGGGGAGAGTCATCCAACGGGACGCACTTCTTTCCAAGAGATGGATCACAGCCATCGCAGAAGACCATAAAGACCACAGCTCGCTTCCCCATCCGCTGTGGGCCAAAGCAGTTTACTTCATATCTTACAGATATGAGCTCTCTGGTGCTGGAAGTTCTGACCAAACCGGATCATTTGCCGATCGCACGGGCTGAGGTTGCAAGcatctctcgtctctctctggCACACCCCATCAGTGGATTTTACACCCTTGTATCTCCGACATCTGAGAAGCTGGGAGAATTACAGGTTTCCCTTAATTTGGAGCCTCTAACTGAAGCCTATGACAGCAGCAGCTCAGGTCCTATCACAGATATCAGCATTGAAGGACCACAAGTCACCACACTGACTGTGCCCTCGCGGTCCAGATCGCTCTCAGCTTGCAGCGGGAAAGAATCAGCGGGGAGCAGCAGCGGAAACACTCCAAGAGGGAAAGACCACTTATATTTCCAAAATGCCCAGAAAGATAAAGGCAATGAAGAGTCACTGGAGAATCAGATACCGACGACAAACAGATCTCTGAACAGTCAAACGACTGTGAATCCTTCAAATCAGGAGCCTTGTGGCCATACAACCAATGATATCCTCTCAGTTATTCTAGAGCGTGGGAACAAGCTCAGAAATGCTATGGTGGTGTCATCTTTAAAATGTGACATGGATTCTGTCCCGGCTCTGAAAGACACCCCTCTGCCTCTCCCAAAGGATAACATCCTGCCACCGTCCAAGCCCTTTCCGTCTCCCTCTGGGATGTTTCTTCAAAATATTCTTCATGCTGATTCAACTCTCAAGCACTGTGATAATGTTGCTGTAGTCTCAGACTGCAGCTTAGactgtcctgtagacatggaTAACAGAGCGGTGGATCTGCTCCTCGGCAGctTAAACACGTCTCCTCTGCCTCTCTGGGATGGAGATATCTCCTTATCTGAATCTCTGTCTGGCCATAGCAGTGTGTGTGGAGACAGTGAGCTCAATGATCCACAATATGATCAGAGCTTACTGGAAAATTTGTTCTACAAACCTCCTATGTCAGATATCAGACCAAACGACACTGAGGAGGAGGATCAAGCAACAGTGTCCTCAAGTAAAAAACAGCTGACGCAGTCTGGACCCAAGATCATTAGAGGTCCTAACTCAGAGCCTCAGCGGTCTGCAGATGCTGGTGAAATCCCTCCTGGCGTGAGTGCAGAGCAGTTGACTTTGCTGAGTTTGATCCGGCTAGCAAGAGTGACCATCGACTCCCTGACCGCACCTCCAGGCAATGCAACCAACACACCTAGAAAGACCTCTAGTAAAGGGAAACCTCCTAGACCATTAACCAGCAAGAAGTGCACATATTTTATCGAGTACGTGTTCCCGATGGCCTCCACTTCCAGTCGACATGATCGTAGTAAGGGGGGAGATGGGGAGGTGACCAGAGCTGTTGCCAGTAAAGTCACAGGAGGAGCCGTGAAGTTCCATCAGCACTCTGTGTTTCCTGTCCAGTTCAGCACAGCAACAATTGAAAAGTGGTGGGGAACTGATCTGAGTTTCAAGATTTACTCACGAAAGACCGACCAAAAGAAACCTGTTCCCATTGGCAAGGCAGTTTACCCGCTGCGCTGTCTGCTGCAGAGCAAGCAGCTGAGTCAGTCTGTCGTCTTACCTGTACAGAGCGTCGAAGGAAACTGTGAAACACAGGAGATTGGACCTCTGAAGgtGTTACTAGAACTTGCTACAGACAACAAAGATTTCTCCTctgaaaaaagtaaaagcaaACTGGCTTGGAATGACACATCGCCTTCACAACCTGCACCCAGTCCACAGAGAGAGACCAGCTCCAGATCTCAACATGTGGACATTGGCAGGGAGGAGTTACCAGCTGCTTCTTTTGAAAATTCCAGACTGAATTCTTGGAGTTCTCAGAAACCCTCGAAAGAACCCTCTGCCCATCCCGGCCTCCACACATCTTCTCATATATCCCGGCAGCAGGTGGAGGAGGAGCCTGAGGTCCTGCTGCATACGTTACTCATGGTGCCAGATGGAAAGAACTTCAACTGTGGGCCCATGCAGGCTCCAAATGTGTACTTGAACTGTAAACTCTGGTGTGATGAGACGGCAAGATCTGTCATCAGCTGGGGTCAGGCAAATCCTTCTTTCAACTTTGCTCAGGTGACTCCTGTGGCCTTAACAACCAAGCTGCTGGAGCGGATGAAAAATAACGTGATGGTAATCGAGGTGTGGCAGAAAACCAGATGTTCAGGGCAGGATCAACTCTTCGGCCTTGTGAAATTACCTCTCCACCAGTTCTACATGTCATTTAGGGATCCAAAGATCACCCACCTTCTTCTCCAGGCGCAGTACCCTGTCTTAGGGGTGGACTGCTACATGCCAGTCATTGATGTCTTCTCAGGTACTTGTAAAGGACACCTCAGGGTAGTTTTGGCTATGGGCCAATCAGAACAGATCGTTGCCCTCCAGCGCACGAGGGATGAAGAATATGACTGCTTGTCTCATCTCGTGAGACCAGTACATCTGCTTGATCACCAGCATCATTCACAAACAAAGGCGATTGCATCACAAGAGGAAACTATGAGAGAGCATCTGTTTGTGATAAGAGTGGAGAAGGTAAATGGGCTGACACCTCTGCAGTCCACAGTGTGGGGTGAGGCTGACTGCTACATCCAGTACAGTTTTCCCTCTCAGGAGGGCGACCCTGCTGCAAAAGTGGACCAAAACCTCATAGAGAGTAGCGTGAACCTGAAGCTGTTTCGTACCACCACAACTCTCTGTATCCCCGACCCGCTGTTTGGTCACTCTGAGACTCATGTGCTTCTGGCTCCTGAAGGAGTTCCTGTTCAGAGGCTGCTGCTCAGCTCTCTTTCAAGCCAAGGCCTAAGCAGTGGAGGGGGTGTCCAGTTTGAAGTCTGGTGCAGATATTATTATCCAAACGTGAGAGACCAGCTTGTGGCCAAAGGAATGCTTCCGTTGTCCAAGTTGTGTGCCATGGTCACCATGCAGAGACAGCATCCTAATAAGGCTCAAATGTTCTCCCTGCCCCTGATTCCCAGGACGGACAGTCCCACAGGACATCAGCCTCAGCCCTCggGCTTACTAGATGTGTGCATTCGGTACAAGCACCGACCAGTGAGACCTGAAGGTCAGACTGGTAAAGGAGCTGCCTCTCGTGTTGTGACACTTGTGGTTCAAGTGCATAGAGCATCAGGGCTGCAGGCCGCCGCAAGGGTTTTATCAGAACAAGATGAAAGATTCAGCTACTTTGCCAGTGTGGGAGTGAACTCGTACGTCACAGTCGAGCTCTCCTTCATGCCTGAGCGTGAGAGGAGATGCACCCGCATAGCTGCCAGGACCTTCTGCCCAGAGTTTGACCACCACGTGGAGATGTCCTGTGATCTGCTGTTTCAGAAGAGCAGTGGAGAAACCTGCAGCCTGGCTGAGCAGCTGGAGGAAGCCTCTGCTGTCTTCACTGTCTGGAACAGAGACAGTCGCAAAGCAGTATACACTCATAAGCCAAAGGAAGTGATGTTGGGCACATTGAAAATACCTCTTGCTGATCTCCTCCATAAAAGAACAGGTATTTCTGGATGGTTTGGAGTTTATATTCCTCAGGAAATAAGTTCTTCTCAGCACCAGCACATCTTGGTCGGGGGCCTCGAGATCTCTGTCAAATTTGCCCACCACTCAGACAGGGAAAGAGTCATTAAAGCTGCTCGGGGTTTGAGCTGGGAAATGACCCAGAATGAAGTGCTAGATGATGAAGAAGCTTGGGGCGACAGCATTAGAAAAATgtctttgactttttcgatgcCTAGAGCATGGATACCTGTCCACTGCTTGCTTCTGCCAGGCCTCAGTGAGCTTGAGCGCTCCACCTACTGCTACTTCAGGTACAAGTTCTACGACCAGGATGCCTTCTGCTCCCAGATGAAACACCCCTCGGTCGAGGAGGAAGGCCAGGCCACAGTGGCCTTCCAGGGAAGTAGAACTGTGGAGCTGAGGAGCACTCAGCCCTTGATGTGGTATCTTCGAGAGGAGAAGCTGGAGGTGCAGGTATGGGTTGCCTTTACAAAAGACAACAGACAGAGGCCCCGAGACACAGACCGACTGGTGGGTTCAGCGTTTGTCGATCTGTCCTCTCTTGCAAAGACACCTAAGCAGAAGCTTACTCTCAGTGGAGTTTATCCACTGTTCAGACGCTCAGCAGCAGATCTACAAGGGGCTGCTCTCAGGGTGCACATCACCCTGACAGCAGGCTTTGTCCCTGCTGGAGTTGACGCACAGGTGGACTCGGACAGCCAGGGGGAGCTCTTATCAGAAGAGGTGGAAGCAGCAGATCGAGTCCCCTCGCCCATTACACCCAGAAAATCAGAAATAAGAGACAGGAATAAATCCTCCAGAACAACTCCAGACATCACATCTGTGCAGCACACCGAAATGAGCACGGCTGAATCTTTCCCTGTGACTGTTGCAGTGGACCGGGCTATGCACCTGAATCTGAAGGGCTGTCCTCTAGCAGAGCGCAGTGAAGGGTCACCATGCTGCTGTGTTTCGTACGTTACTGCAGAGTCTGCTGAACCAGTGTCCACAGCTGTCATAGCCAACGCCGACTCCCCTGTGTGGGACCATCAACATGAGTGCAGGCTTTCAAAGCAGCTACTGGTCGATCCACAGCAATCTCTCGTGTTCAAAGTCTGGCACAAAGGAGAAACGGAGAGGGTGATTGGATTTGCCTCTGTAGACCTGTCCCCCTTAGTTTGTGGCTTCCTGTCAGTGTGTGGTTGGTACAACATCACAGACTTCAGTGGTCAGTGTCACGGCCAGCTCAAAGTGTCCATCACTCCACTAAAGGGTGTCCACGATCTCCGAGGACAGAGAAAAACTGTGAATGAAGAAGCTGCCAAAAACACACCGCAGACTTTATTCCAGGCACTCCCTCTCAGCTACCACACCACAGCCACATACAGCAGCTTCCCCTCTCACATCAGCCGACACCCCGAGCAGAAGATCTCGTCGCCCGACCACACAGACAGGCTGTTCTCTGAAAGGTCCGGTGAGGGCGACCGCCACATTGAGCATATGGACAGAGTACGTCTTTACCATCAGAGTCTGCAGGAGCAAACAGCCGCTCATTCTGTCTGTAGCAGCAGTGCTGGTGACATCAATCCCTCCAGCTCGCTCCTCTTTTCAACACTCAGgaaaaaactaAGTGAGCTGGACAACATCCAGAGATACTTCAGCCGTAAGCTTTCAACTCCCACATTCCCATCCACGAGTGAGCAGGACTGTCACAGCAAGCACGAGGAACCGaggaacacagagacagacacatgtCAGCTTCTTCTCAAGTCCAACCAGTTAGTTGGACAAGTCAACAATATCATTAGTGGTCTACGAGAACACCACCTAGAAACGATTCCCTCGGACTCCCGGAGCAGCTCAACAACTTCCCCTGTTGCAGACAACAACCCACAAACTATCCGTGAAAGTATCTCCAGTCCACGCAGAGCTTCCAATTCTTCCCAAAAAGGTTTGTCTCCTCTGCACTCTCCAAAGATGTCCGAAGAGCATGCAGACTCTGAGCCTGAGGAAGAAAAGGACAGTGGAAACTACAAGGGTGCTGTGTCCGAGGATGAAAGCGAAGAAGGTGCAGACAAAGATGGAGATGGGACAGGTAGCACACGGGATGAGAAATCtgatgaggatgatgaagaggaagaagaagattaCGAGGAGGTTGTGGTGAAGCCGAGGCACCTCAATGAGGTGACCTCTTTAACAGACAAAACCAGTCCTTGGACCAGCATCATGTCAGACCCTGACCTGTTGTCCCTGGTGAGCCTGGAGGCACCAGAGGAGCCGGATCTGAGCCAAGACGAGGAAAGGCAGATGTTAAATCGTCAAACTCACGACTGTAGTGGAAAACACAAATGTGCCAGAAAAGAAGAACGTGAACGTCAACAAAATGACTGTTTGGATGAATCAGCAGGAGACACTacggacacagagagagatggtgaAAGGACACTACaagctgtagatgagagaaaagAACCCAACAAGGACCCCAATGAGGGGTCAGATGACAGAGCTTCACCACCCACCGCGCTGCACGCCACAGATACCCATGATGCTTCATGCTCCCTGGACAATCGAGACATTCCACTCCAAACCTTGGTCCCTGTGGAAGTCCCTAATTTCTTCCTCCCTTCTCACCAACTGGAGGCATCTATGAGAGTCATACGTTTAGCTCCTTCTTTCTCCCAGACCGCCAGTGACCCGGTGAGTATTTGTCACCAACTCGACTTCTGGCACTCACACTCACTTGCTTTTCCCCACTTTATACTCTCCACTCACTGAGTATCtagttattttcttttattacacACAGTCCTATTTAAAGAATGTATGACTATGAATTTGTAGTCAGTTGACATCAGGACCCGACTACTACGCAAAAGCAGGGCGTTATTTATAAATCAATTTTCACTTCACATGACACATACTGAACAGAGACCAGTCAAGAATTGTGACATTGTGTACCAACTAAAGTTCAGCGTAATTAACTTTACACTATTTTATAACCTGACTTGTTAGTTCAAATAGATGATGTAATaaacaatatatacagtatctcacaaaagtgagta

Function

GO: NA

KEGG:

id description
K16751 C2CD3; C2 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30409 lncRNA downstream 16699 37692580 ~ 37693086 (-) False LOC120571840
TU30405 lncRNA downstream 41841 37667639 ~ 37667944 (-) True G22371
TU30348 lncRNA downstream 143330 37566234 ~ 37566455 (-) True G22321
TU30347 lncRNA downstream 143610 37565863 ~ 37566175 (-) True G22320
TU30338 lncRNA downstream 258945 37450013 ~ 37450840 (-) False tada2a
TU30517 lncRNA upstream 171515 37902256 ~ 37903681 (-) True G22458
TU30523 lncRNA upstream 175621 37906362 ~ 37910118 (-) True G22462
XR_005642040.1 lncRNA upstream 573065 38303806 ~ 38351320 (-) True LOC120575673
TU30607 lncRNA upstream 621641 38352382 ~ 38352586 (-) True G22520
TU30659 lncRNA upstream 996863 38727604 ~ 38728965 (-) False LOC120570635
XM_039820942.1 mRNA downstream 11646 37692438 ~ 37698139 (-) False LOC120571840
XM_039820935.1 mRNA downstream 11651 37692438 ~ 37698134 (-) True LOC120571840
XM_039790374.1 mRNA downstream 23384 37675466 ~ 37686401 (-) False camkk1b
XM_039790385.1 mRNA downstream 23384 37675466 ~ 37686401 (-) True camkk1b
XM_039776721.1 mRNA downstream 53990 37652509 ~ 37655795 (-) False si:ch211-105f12.2
XM_039788043.1 mRNA upstream 2100 37732841 ~ 37746282 (-) False p4ha3
XM_039788034.1 mRNA upstream 2100 37732841 ~ 37746270 (-) False p4ha3
XM_039788026.1 mRNA upstream 2100 37732841 ~ 37746270 (-) True p4ha3
XM_039789303.1 mRNA upstream 16005 37746746 ~ 37747713 (-) True or95a1
XM_039785406.1 mRNA upstream 40806 37771547 ~ 37772536 (-) True LOC120548891
XR_005636371.1 other downstream 53990 37651459 ~ 37655795 (-) True si:ch211-105f12.2
TU30252 other downstream 440465 37264573 ~ 37269320 (-) True G22245
XR_005641838.1 other downstream 1159671 36460680 ~ 36550114 (-) False dph1
TU29998 other downstream 1379376 36318773 ~ 36330409 (-) False taok1a
unassigned_transcript_104 other downstream 2662836 35046878 ~ 35046949 (-) True trnap-cgg
XR_005637810.1 other upstream 4124 37734865 ~ 37746270 (-) False p4ha3
TU30601 other upstream 622319 38353060 ~ 38363688 (-) False robo2
XR_005641089.1 other upstream 998200 38728941 ~ 38735823 (-) False LOC120570635
TU31014 other upstream 2295141 40025882 ~ 40033156 (-) False LOC120546248
unassigned_transcript_105 other upstream 3301065 41031806 ~ 41031878 (-) True trnak-uuu_7

Expression Profile