RNA id: XM_039784191.1


Basic Information

Item Value
RNA id XM_039784191.1
length 3055
RNA type mRNA
GC content 0.50
exon number 16
gene id tyw1
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 14344119 ~ 14415378 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGACGCACTGTGACTACGGGAACTGGTACAGTGGTAGAAGAAACAAGTTctagccatagacagtatatatggTTCTAGCCCGTGTTTGGCACGTGATTTGCGACGAGGGATCGATAGTTCTGCTTTGTATTTCGGTGGACTAGAGCGTCAACAATACAAAGAACTACACTTCCCAGCATGCTCATGAGCCAAAAATATGGTTGCACACAACATCAGCTGCAGAGGACTGTGTATTTTAATACTCCACTTGCAAAGATGCTGAGTTTCTTCGTGATTATTGTTCTTTGCATAAGCCGTGTGTCTACTTTTGATACTAAAGTCTCACAGAATGCCCGCAGTCCCAGTGAGAGCTATCTCATTTCTATATGGCAAAACAGACTGTACTTGTATTCAGCTGCTGCACTAGTCTTTGGCATCTGGTTCTCACTGAAGTTGGTACTGAGAAAGAAAAGCTTCTCCAAAGACGTCGGCCCGTGGGTCTACAAAGCTGTGAAGAGCAATGACAGCCCTGACAGAGACACCTCGGTTCATGTGTCCGGAGTTAAAATCTTCTACGGTTCACAAACTGGAACTGCAAAGGGTTTTGCAGAAGAGCTGTCAGAGGAGGTGAAGACTTTGGGTATACCAGCAGAGGTGATCGACATCAAAGACTACGATCCAGACGATCAACTTGCTGATGAGTGCACCAACAAGTCAGTCTGCGTATTTCTTGTGGCCACCTACACTGACGGACAGCCCACAGAGAACGCTGAGTGGTTCTGCAAGTGGTTGGAGGAGGCATCCACTGATTTCAGATACGGAAAGACTTACCTCAAAGGCCTCAGATATGCTGTGTTTGGTCTCGGCAACTCTGTCTATGTTGGCCACTATAATACGGTGGGTAAAAACGTGGACAAGTGGCTTTGGATGCTGAGTGGCATGCGAATCATGACCAGGGGAGAGGGTGACTGTAATGTGGTGAAGAGCCGTAATGGCAGCATTCAGGCAGACTTCGTGGCCTGGAAGGTCAGGTTCCTGAAGCGCCTACTGGCCCTAGCCAAGGGTGAGAAGAAGAGCTGCAGCGGGAACTGTAAGACTGGAGGCTCCTGTAAGAACAAGAGGAAAGACGGCCAGgagaagggggaggaggaggaggaggaggagaaggcagCTCTGCAGAATAACAGCTCGGAGGAGGATCTTATAGAGTCCAGCAGCGATGAGGAGGACTCTGGCCTGCAAGATGAGAAAAACTCTGGTTCAGTGGTTGACATGGAGGATCTGGGCAAGATCATGAACAGTGCCAAGAAAGCAAAGAGCAAGGAGGAGGGTCGAGGAGACGGCCAGATGGTGAAGCTATCCAAGTTGAACGGCGTGAAGAAGATTGAAGATGACGGGGAAAGAAGAGAGATGATCACCCCTGCCCTTAGAGGGGCACTGACAAAACAAGGGTACAAACTAATTGGAAGTCACTCAGGAGTGAAGCTTTGTCGATGGACCAAGTCCATGTTGCGAGGGAGAGGAGGCTGTTACAAGCACACCTTCTATGGTATTGAGTCCCACCGGTGCATGGAGACTACCCCCAGCCTCGCCTGTGCTAACAAGTGTGTCTTCTGCTGGAGACACCACACCAACCCTGTGGGCACAGAGTGGCGCTGGAAGATGGACCCTGCCGAGAAGATCCTGCAGGATGCCTTGGAGAAGCACCAGAGCATGATTCGACAGTTCAGAGGTGTCCCCGGAGTGAAGCCAGAGCGGTACGAGGAGGGCTTGGCAGTCAAGCACTGTGCCCTCTCCCTGGTGGGCGAGCCAATCATGTACCCCGAAATCAACACCTTCATCCGCCTCCTCCACTCTCATCGCATCTCCAGCTTCCTGGTCACCAATGCACAATTCCCGAAGGAAATCCGGAGCCTGGTGCCAGTTACCCAGTTGTACGTTAGTGTGGACGCCAGCACCAAAGACAGTCTGAAGAAGATTGACCGACCACTTTTCAAGGACTTCTGGCCCCGCTTCCTGGACAGCCTCAGGGCCCTGGGAGAGAAGAGACAGAGGACGGTGTATAGACTGACACTGGTAAAGGCCTGGAATGTGGAGGAGATGCAGTCCTACTCAGAGCTCATTGCTTTGGGCCAGCCGGACTTCATTGAGGTCAAGGGAGTGACGTACTGTGGGGAAAGCTCTGCAAGCAGTCTGACCATGGCTAATGTCCCCTGGCACCAGGAAGTGGTCGCCTTCGTCCAGCAGCTGGCTGACATGTTGCCTCAGTATGAGATCGCCTGCGAACACGAGCACTCCAACTGTTTGCTCATGGCACACACCAAGTTCAAGGTGGATGGCGAGTGGTGGACGTGGATCGACTACGAGCGTTTCCAGGAGCTAGTCCAGGCTCATGAGGAGAGTGGGGGACAGCAGGGCTTCTCAGCCTTGGACTACATGGCCAAGACGCCCAGCTGGGCTCTGTTTGGAGCCAATGAGCAAGGGTTTGACCCCGCCGACACACGCTTCCAACGACGCAACAAAACCAAAGACATTTCAGGATGCTgatagatgagagagagagagagagagagagagagagagataggatGAATGGAACGAGTACTAATCTCCAAAGCATAACAAATTTAAACGGGTAGGGTTCAATGGTTTTATTCCTCTTTGGATCTTTGTTTCAGAGTTTAACTTTCCCCAGCTGCCCTCTTTCTCACTTAAACTCTTTCGCCCTCGTTTCATTTCTCTACAATTTGGATCTTTCATTCAATTGGCGCGAGCTCTAAGATCAGCCAAAAACTGTCAGAATTAATTTAACATTCCCCTTCACATTGACTTTAAGTGCTTCTTTTACTTTCTGTACATAGATATTTGATACTTCCCACTTTTTTCGAAGGAGTCATTATAAAACATATCAGTGGCTTTGATCTGTTAAACCATCTGGCAGCACTTGGTTTACACTGTTAAAGTTGGGAGTTTGTGTCATTATCATCATTTcggacttttctttttttttatattccagGTTCTACTGTAGTTAGGCAGCTGTACAGCTCAGGACATGATAAGCATATAAGGAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23170 lncRNA downstream 94381 14247928 ~ 14249738 (-) False caln1
TU23171 lncRNA downstream 94451 14247928 ~ 14249668 (-) False caln1
TU23172 lncRNA downstream 94451 14248022 ~ 14249668 (-) False caln1
TU23145 lncRNA downstream 128405 14213848 ~ 14215714 (-) True G16942
TU23134 lncRNA downstream 203686 14138726 ~ 14140433 (-) True G16933
XR_005637815.1 lncRNA upstream 105390 14520766 ~ 14523356 (-) True LOC120551036
TU23270 lncRNA upstream 133873 14549249 ~ 14549494 (-) True G17037
TU23349 lncRNA upstream 222535 14637911 ~ 14638943 (-) True G17104
TU23356 lncRNA upstream 227535 14642911 ~ 14666603 (-) True G17106
TU23386 lncRNA upstream 704492 15119868 ~ 15129494 (-) True LOC120572551
XM_039790840.1 mRNA downstream 21286 14248692 ~ 14322833 (-) True caln1
XM_039790833.1 mRNA downstream 23570 14248692 ~ 14320549 (-) False caln1
XM_039778448.1 mRNA downstream 57569 14285723 ~ 14286550 (-) True LOC120544580
XM_039783520.1 mRNA downstream 140812 14166113 ~ 14203307 (-) True eml2
XM_039783530.1 mRNA downstream 140813 14166113 ~ 14203306 (-) False eml2
XM_039792319.1 mRNA upstream 5629 14421005 ~ 14422454 (-) True LOC120553667
XM_039792380.1 mRNA upstream 7179 14422555 ~ 14498261 (-) True cldnj
XM_039792370.1 mRNA upstream 7179 14422555 ~ 14451987 (-) False cldnj
XM_039792333.1 mRNA upstream 11127 14426503 ~ 14427846 (-) True LOC120553674
XM_039792402.1 mRNA upstream 20677 14436053 ~ 14437460 (-) True LOC120553707
TU23133 other downstream 257355 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 521062 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 589503 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other downstream 636079 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 1008980 13322868 ~ 13335139 (-) False sae1
XR_005641363.1 other upstream 903464 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 1280178 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 1280178 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 1287233 15702609 ~ 15714263 (-) True G17287
XR_005637173.1 other upstream 1630632 16046008 ~ 16060408 (-) False sdhdb

Expression Profile