RNA id: XM_039784250.1


Basic Information

Item Value
RNA id XM_039784250.1
length 2032
RNA type mRNA
GC content 0.51
exon number 4
gene id map6b
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 35034692 ~ 35040789 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGACGACCTCAGGTGATAGTTCACCGTGCAAACTCACACACCCCGGGCATCTCGAAGCATCACACAAATGTGGGTGGGGTCGCTTTTTGATGCGCAACCAGACAGCAAACGTGCACTACACAgcaacccccccctcccccaaagtCCCTTTAAACTTCAGTCAGAACAAATAGCCTgcaggaggacagagagggaggcgTGGGGGGGCTCTACTTCCCTTTAGTCTCAGGCAAAGATCGGTGAGAACAGAGAGTTACATCGAGCTTTAAGGAGGAATAACCCTGACTGGGCAGAAGCAGCACCTGACCGAGCACTTGCAAGTCTCCGAGTCCCTCCCGAGTATTTATCACCATGGCATGGCCGTGCATCACGCGTGCTTGCTGCATCAACCGCTTTTGGACCGAGCTGGACAAAGGGGACATCGCGGTGCCTTTGGTTTTCACCAAATACTCGGATGTGGCCGACTTGCAGCATTTTCCCCATCACCCGCAGCCGAAACTGAAGAGGGCCGGAGCCATTGCCATAGAAACCCAGCCCCATCCCGGCGAGCAGGAGGCTGGGAAGGCACCGCCCGCGACGGGTGCCGCAGCGGGCAATGACGGCTCTGCGTCCGTCATGCGCCAAGACTTCAAGGCGTGGAAAGTGCGCCCCGAGCCCAGCTGCAAACCCAGAAATGAGTACCAACGCTCGGCAGCCCCGTTCAACACCGAAACGCAATACCAGAAGGATTATAAACCCTGGCCTATACCGAAGAAGCACGACCACCCCTGGATCCCCAAACCCAGCCCCACCGCCACCGCCGCCGCCTCCGGTGGGCCGGAGCGCAGCGCGGGGAGCGGAGCGCAGGAGCCTGCGGCCACCGAGGCCGAGAGCGGCGTGGAGAAGAGCGAGCTCGAGGAGAAAACGCAGGAGAAAGAATCAAAGGAGCCGACGAAGAGGAGCGTGAAGAGGGAAAagtcagcagacagacaaacggGCGAGAAGACAGAGGCACAAGTGGCTGCAGATGTGAGCGCCGAGCAGCGGaaaggcagagcagcagcagacgcTCTCAACAGACAGATAAAGCAGGTTATGACGACTTCCAGCAGCTACAGGACTGAGTTCAAGGCGTATAAGGATGTGAAACAAGTGAAGGCCATTAAAGCTCCATCTCAGTTTAAACCCCCAGTGGAGGAGACCAGTCTGGAAACCAGCTACAGCGCCACATACAAGGGGGAGCAGGTGAAGGCTCACCCCGCTGACAACAAGCTGATGGAGCGCAGGAGGATACGCAGCCTGTACAATGAGCCTAGCAAGGAACCTGCCAAGgTGGATAAACCAGTTTCTCGCACCAAACCAAAAAagacaccaacaacaacaacagggaaaatggtgaaaaaatcAAAAGAGAAGCAGATTGCCAGTTCCCAGTCAGCCAAGAAGAAACCATCTTTGGGCGCCCCAGAACCCAAACCAGATGGAGCTGTCACAAAGAAGAGCAAAGAGATTAGCAATAGACTGGCTGAAGCGAAGCAGTAAAAGTAGTTCCTCTCTACACTGCGTGATCAAAAAGGTGACTTGACGAATTAGGCAAATTTCTTCCCTTTGGTTTATTTCCTAACCTGTTGTTTTTGCTGTCCTGTCATATATTGTTCACCTTTGAATGGGCACTGATGTTGAGCTTTTAGAATAATCCAAATAATTTCactgcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagactgtgttaATGTGTGAAAGTATGTGATttcttgtattttggtgcacagaaCCGCTTTTAGTATTGAGCACATAATTTGCACATTGTTTAAATAACTTCTGTTTGACATTGAACTATAAAAAAGCCATCAGTACACATGTAGTATGTGTATGATAGGACATGTTTACCTTTGTCTGAATGGATAACAATTGAGatcaaaattaaaatgattgtAGAAAATG

Function

GO: NA

KEGG:

id description
K10432 MAP6; microtubule-associated protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29651 lncRNA downstream 18412 35016047 ~ 35016280 (-) True G21779
TU29538 lncRNA downstream 124971 34909365 ~ 34909721 (-) True G21716
TU29496 lncRNA downstream 248456 34785923 ~ 34786236 (-) True G21685
TU29487 lncRNA downstream 472417 34556686 ~ 34562275 (-) False LOC120570300
TU29476 lncRNA downstream 603394 34431071 ~ 34431298 (-) True G21665
TU29648 lncRNA upstream 6436 35047216 ~ 35096251 (-) False dyrk1ab
TU29695 lncRNA upstream 195295 35236075 ~ 35240308 (-) True G21805
TU29729 lncRNA upstream 224515 35265295 ~ 35269902 (-) False zgc:77784
TU29757 lncRNA upstream 380501 35421281 ~ 35421721 (-) True G21854
TU29797 lncRNA upstream 541701 35582481 ~ 35582706 (-) True G21885
XM_039783456.1 mRNA downstream 7260 35018246 ~ 35027432 (-) False zgc:112083
XM_039783474.1 mRNA downstream 7315 35018246 ~ 35027377 (-) False zgc:112083
XM_039783466.1 mRNA downstream 7399 35018246 ~ 35027293 (-) True zgc:112083
XM_039822474.1 mRNA downstream 58330 34973004 ~ 34976362 (-) True c18h3orf33
XM_039822473.1 mRNA downstream 80621 34904230 ~ 34954071 (-) False plch1
XM_039784237.1 mRNA upstream 341 35041121 ~ 35046088 (-) True LOC120548171
XM_039779804.1 mRNA upstream 6398 35047178 ~ 35059302 (-) False dyrk1ab
XM_039779789.1 mRNA upstream 6398 35047178 ~ 35059302 (-) True dyrk1ab
XM_039779814.1 mRNA upstream 6398 35047178 ~ 35057960 (-) False dyrk1ab
XM_039779796.1 mRNA upstream 6398 35047178 ~ 35057960 (-) False dyrk1ab
TU29485 other downstream 552659 34481458 ~ 34482033 (-) True G21674
TU29436 other downstream 936351 34094562 ~ 34098341 (-) False LOC120548089
XR_005641864.1 other downstream 1405424 33613429 ~ 33629268 (-) False mfsd1
TU29117 other downstream 1894561 33135892 ~ 33140131 (-) False LOC120549978
TU28994 other downstream 2199327 32802569 ~ 32835365 (-) False LOC120551578
unassigned_transcript_104 other upstream 6098 35046878 ~ 35046949 (-) True trnap-cgg
TU29998 other upstream 1277993 36318773 ~ 36330409 (-) False taok1a
XR_005641838.1 other upstream 1419900 36460680 ~ 36550114 (-) False dph1
TU30252 other upstream 2223793 37264573 ~ 37269320 (-) True G22245
XR_005636371.1 other upstream 2610679 37651459 ~ 37655795 (-) True si:ch211-105f12.2

Expression Profile