RNA id: XR_005637172.1


Basic Information

Item Value
RNA id XR_005637172.1
length 722
RNA type transcript
GC content 0.54
exon number 5
gene id sdhdb
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16046008 ~ 16060408 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAACATCCAACATCTTTGTGCCGCTGACTACTCACTCAACATCTACATCCGGGTAACTGTGCTGGTGACCTTGATTATCATGGCGGCTATCGTCAGGTTGGGTTCTGTGTGTCGCAGAGGAGTCAAACCTCTGTTCTACCAAAGCACTTTGTTGGCCAGGCCGCTGGTTGTACCACACAAATACCAGGAGCAGCCCTACCAGCTGACAGCGAAGATTCATGCATCACAGGCTTTGTACGCGGGCTCCGGCTCCAAAGCCGCCTCTCTGCACTGGACGGCAGAGCGAGTGCTGAGCGTCTTGCTTCTGGCCATGGGACCCGCAGCCTATTTTAACCCCTGTCCTGTCGTTGACTACTCCTTGGCTGCTGCCCTGACCCTGCATGGCCACTGGGGTATTGGGCAGGTGCTTACAGACTACGTTCATGGGGACACAAAGATGAAGATTGCCAATGCGGGCCTCTTCCTCCTGTCCACGGTCACCTTCGCTGGTCTTTGCTACTTCAACTACAACGACGTGGGAATCTGCAAAGCCATCGCGCTGCTCTGGAGCAAATGAAGTACAACTATGGACTGGGAAGCTTGGGAGGACCGGGACACTGGGACGGGAGCAATCTCGCCCCGGGCTGATTGTAAAAGTTCAAGATTATACGCACAGGATTAGACGTGGCAAGAAAAATGCACTGTAACTGCCTCGGCGGAATAAAGTTGGCTCTACAGATG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23748 lncRNA downstream 1856 16016922 ~ 16048016 (-) True G17389
TU23597 lncRNA downstream 330831 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA downstream 335783 15713132 ~ 15714089 (-) True LOC120549843
TU23562 lncRNA downstream 398872 15646740 ~ 15651000 (-) False lyrm9
TU23563 lncRNA downstream 398872 15646740 ~ 15651000 (-) False lyrm9
TU23849 lncRNA upstream 340215 16400623 ~ 16400836 (-) True G17466
TU23886 lncRNA upstream 356887 16417295 ~ 16418742 (-) True G17499
TU24024 lncRNA upstream 636405 16696813 ~ 16698009 (-) True G17571
TU24054 lncRNA upstream 650361 16710769 ~ 16766469 (-) True G17579
TU24067 lncRNA upstream 659810 16720218 ~ 16935713 (-) True G17583
XM_039788617.1 mRNA downstream 26371 16016398 ~ 16023501 (-) True bco2b
XM_039784500.1 mRNA downstream 41807 15904889 ~ 16008065 (-) True sorl1
XM_039792538.1 mRNA downstream 323758 15724157 ~ 15726114 (-) False LOC120553928
XM_039792939.1 mRNA upstream 4036 16064444 ~ 16072903 (-) False il4i1
XM_039792930.1 mRNA upstream 4036 16064444 ~ 16072887 (-) False il4i1
XM_039792921.1 mRNA upstream 4036 16064444 ~ 16072806 (-) False il4i1
XM_039792946.1 mRNA upstream 4036 16064444 ~ 16072804 (-) True il4i1
XM_039782690.1 mRNA upstream 129723 16190131 ~ 16208976 (-) True LOC120547208
TU23600 other downstream 335609 15695554 ~ 15714263 (-) False G17287
TU23589 other downstream 335609 15702609 ~ 15714263 (-) True G17287
TU23599 other downstream 343417 15695554 ~ 15706455 (-) False G17287
XR_005641363.1 other downstream 724074 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23133 other downstream 1963108 14081963 ~ 14086764 (-) False gpr4
TU24093 other upstream 787753 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 1413328 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 2071679 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 2145174 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 3742305 19802713 ~ 19810130 (-) False si:ch211-11n16.2

Expression Profile