RNA id: XM_039784716.1


Basic Information

Item Value
RNA id XM_039784716.1
length 2864
RNA type mRNA
GC content 0.55
exon number 18
gene id LOC120548432
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 45695202 ~ 45767319 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacagctaggcAGACTTGAAAGCGCCTTGTAAACAATAGTGAAGACAAACACTGGAGGCAGGGGAAGAGTCGTGCCTCAGGCTGACTCAGTTTTTTTCCTGACACTGTGTTGAGGAGGAAATGACAGGTGGGCTtagacgcacagcagcacagagacGCTCAGGCTGAGGGGAGCAGCTAGGCACTCACCAACCTCACAGAATCACATGTAGGACGCTGAGGCTGCAGCAGGGAAGCTCTCAGTGGACGGCTTGCTGCAGAACTCCAGCTCTGAGTTGCAGGACATGATGAGACGCATGGGCTCCAATTCAGAAGACCGCTCTCGCCTCACTGCCGCCCTCTCTTGTCTGAAGAGTGCAAATGACACAGGAGTTGGCCCGAGGCCTGACTTTGGTTCCTGCAGCTCTGAGTCCCGACAGAACAGTGATGCCTTTTCTTCCACCAGCCCCCTCTCCAGCTCTGATAGCCCCTCCACCCCCCTGCCGCCCACCAGCACCCACGCCCGCTCCATCTCCATATCGGTGCTTCCTTGTTCAGATGGCGCCTTCACCCTGGAGCCAAGCCCCCTTCCGGCAACTCGAGCCCCAAAGACACGCACTACCACGCCCTCCCACACACCGCCGCCACCGTCCCGAAAACTGCTGCAGCTGCTCCCCAACATCGCACTGACAAGGAGCAAGAGTCAAGAGTCCCAGCTGGCCAACCGCATCGAGGATCCTGCAGCACACAAAGCCTGTAAGAAGAATAAAGTGTTGGCTGCTCTTCATATCAACGGCTCCGGGCACCCACCGGAGGACTCGGCGCTGCGGTCACCGCTGCTGTCTGCCCGGACACCAGGCCCTGTCCCGGCCTCAGCCCCATACACCATGCCTGCCACCCCCACCCAGCTGGAAAatgTGACCATGCACAGGAGCTCCCCTCAGACGATGAGGAGGGACATTGGCTTGGCTGTAACACACAGgTTTTCAACCAAGTCCTGGCTCTCCCAGACGTGCCAAGTGTGCCGCAAGAGCATGATGTTTGGTGTCAAGTGCAAACACTGCAAGTTGAAGTGCCACAACAAATGTACCAAAGATGCTCCCTCATGTCGGATATCATTTCTCACATTACCAAGGATACGGAGGGCGGAATCAGTGCCATCCGATATCAATAATCGGATTGATCAGACAGCAAACATCCCACTGCAATTTGGCACTTTACCAAAAGCAATAAACAAGAGGcaggAGCCTCCCCCCAGTTTAAACCATCTGGACTCAAGCAGTAACCCATCATCAGCCACCTCCTCCACACCTTCCTCCCCAGCACATTTCCAGCAGAACAACCCCCCAAGTGTCAgcgccacacccccacccaacGCGTCGCCGCAGGGCTCCCGGGACAGTCGCTTCCACTTCCCAGATGTTCCTGCTTCCACATATACTGCTGTTCAACATCCTGGCAGCCACTATGAATCTGGAGTGTCCCAGGTGGCCGTCACTGAGAGgcagctgacagcagcagagccaGCAGGGGGGGACGAGggggacgaggaggaggaggaggaggaattaGCTGACCAGGGCAACAGTGCTCCCACTGAGCAGTCTGAGGAGGACGGGCTGGAGGAGCTGCCCTCCTCCATATGCCGCCGCGGGGCCGTCGGCCGCTGGAGGGGCCCGTTCACTCGCATGGCCAGCCAGACCAGCATCTACCTGCAGGAGTGGGACATCCCATACGAGCAGCTGCAGCTGGGAGAGCTCATTGGCAAgGGCCGCTGGGGGAAGGTGCATAAGGGCCGCTGGCACGGCGAGGTGGCCATCCGCCTGCTGGAGGTGGACGGCAACAACCAGGACCACCTGAAGCTCTTCAAGAAGGAGGTGATGAACTACAGGCAGACACGGCACGAGAACGTGGTCCTGTTCATGGGCGCCTGCATGGCTCCGCCACACCTTGCCATCATCACCAGTTTCTGTAAAGGCGAGACTCTATACTCTGTTGTAAGAGACAGAAGTCAGATACTGGACATCAATAAGACCAGGCAGATTGCTCTGGATATTGTAAAGGGAATGGGTTATCTGCATGCCAAAGGCATCATTCACAAGGACCTGAAGTCTAAGAACGTGTTCTATGACACAAACAAGGTGGTGATTACAGACTTTGGCCTGTTTGGGATGTCTGGAGTGGTACAAGAAGGCAGaagACAGAACGTGTTGCGGATACCTCAGGGCTGGATCTACTACCTGGCTCCAGAGATCGTTCGACAAATGAGCCCGGAGGTTGATGAGGACCAGCTGCCTTTCTCCAAAGCTGCTGACGTTTATGCGTTCGGCACTATCCTGTATGAGCTGCAGGTGGGAGACTGGCCAATCAACAAACAGCCTGTGGAAGCCAAGATCTGGCTGGTGGGCAGCAGCAAGGGCATCAAGAAGGTGCTGGCAGACACCAACCTGGGCAAGGAGGTCACGGAGATCCTGTCTGCCTGCTGGTCCTCAGAGGCCGACAACAGGCCCACTTTCACCCAGCTGGCAAGCATGCTGGAGAGGCTCCCCAAACTGAACCGCAGGCTGTCTCACCCCGGACATTTTGGGAAGAACACTGAGTACGTATCATAGAAAGAGGAGCTTTACTCGTGATGCAGGGTGGAGCGGCCTACAACACCATTTAGACCAACATTCAAAGAGAGTCTGCATCAGTTTGTTTAAGTCATAAACGTCTACATTTCCATGTCATATGAGATGAGATGGAGCCAAAGGACCCAATACACCATcaatcaaatgaaaaatgttgtgaATAGCATATTTGTAATGAAATGTGAATATTATGAAGCTGTCCTGCTGATTATCAACTAATATAAATGACCTTTTCTAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32410 lncRNA downstream 224899 45469859 ~ 45470303 (-) True G24037
TU32409 lncRNA downstream 226817 45468162 ~ 45468385 (-) True G24036
TU32367 lncRNA downstream 356330 45338506 ~ 45338872 (-) True G23996
TU32361 lncRNA downstream 364204 45330732 ~ 45330998 (-) True G23990
TU32357 lncRNA downstream 376320 45318607 ~ 45318882 (-) True G23986
XR_005637962.1 lncRNA upstream 28806 45774212 ~ 45775139 (-) False LOC120552149
TU32528 lncRNA upstream 28806 45774212 ~ 45775197 (-) True LOC120552149
TU32702 lncRNA upstream 439113 46184519 ~ 46184757 (-) True G24264
TU32710 lncRNA upstream 590940 46336346 ~ 46336574 (-) True G24272
TU32714 lncRNA upstream 667169 46412575 ~ 46412774 (-) True G24276
XM_039786090.1 mRNA downstream 14038 45665380 ~ 45681164 (-) True LOC120549281
XM_039791256.1 mRNA downstream 66306 45496968 ~ 45628896 (-) False myo18ab
XM_039823176.1 mRNA upstream 39194 45784600 ~ 45808422 (-) True wsb1
XM_039785509.1 mRNA upstream 69676 45815082 ~ 45861092 (-) True cuedc1b
XM_039785495.1 mRNA upstream 76081 45821487 ~ 45861092 (-) False cuedc1b
XM_039785500.1 mRNA upstream 76083 45821489 ~ 45861092 (-) False cuedc1b
XM_039780274.1 mRNA upstream 126817 45872223 ~ 45905007 (-) True akap1b
unassigned_transcript_136 other downstream 768746 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 769043 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 769644 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 769942 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 772589 44922541 ~ 44922613 (-) True trnar-acg_7
TU32961 other upstream 1389451 47134857 ~ 47142549 (-) False bet1l

Expression Profile