RNA id: XM_039784725.1


Basic Information

Item Value
RNA id XM_039784725.1
length 1323
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC120548458
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5465950 ~ 5472587 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcagtacacacacacacacaacacacacacacacacacacacacacacacacacacacacgcacagacacacacacgcacacacacacacacacccgggAGTTATTCTCACTGTCCTGAGACAACACGCAGCAGTCAAAGCGTTTGAACATGTCCTTCCTGCTGATCGTGGCGTTGGCGTTGGCGCTGGGCTTCCTCCGGACCGGTCTGGCTCAGGACGAACGGTGTGTGGACTTGATGAAGGACAGCAGCTGCCAGTCAGACGGTCCCAGGTTCTTCTACAACAGCACCAGCTCCAGGTGTCAGAGGCTCGCCGGGGGCTGTGGGTCCAACAGGAACACATTTAAGACTCTGGAGAGCTGTGCAACTCTCTGCCATACGGTGGTTTGTTACCGGCCCGTGGAATACGGGGCTTACCCCCCCATTCGCTTCAGCCACCACACCGACAACATAGGCAAGCCTAAAGACACCACCGTCAACTTCTACTTCTACAACGTGTCCAGTGGGAGCTGTGAGGGATTTCACTTCAGAGGCAGTGCGTCCAACGGGAACATCTTTTGGACCGTGAAGGAGTGTGAAAGTCTCTGTGGTGATGTCAAAGAACGGTGTGTGGACTTGATGATGGACAGCAGCTGCCAGTCAGACGGTCCCAGGTTCTTCTACAACAGCACCAGGTCCAGGTGTCAGAGGCTCGTCGGGGGCTGTGGGTCCAACAGGAACACCTTTAAGACCCTGGAGAGCTGTCAGGATCTCTGCTATGGAAATGCTACTACAAGCAGCCCACTGACTGAGGATCCAGGCAGACCACTCTCTGAGGATCCAGgCAACTCAGACTTTAATATTCTGTTCGGGATCATCGTGCTGATGGTGGTCTTTATGGTTATTGTCACCTTTGTCGCCATTGTCGTCCTCGTCGTGCAATACTGCAGACGTGCATCTTCCAACGGATACCGGCTGTTGGGTTCTGGTCCGTGAGCGGTCCTAGTCGGCGTCCGTGGAGGGAGAAGCCATCGCATGTGTTTATTTCTGAATCAATTAAATTATATTCTGTATTTTGGATAAAGATCGGGAAAATTCCTCATTCTCTGTTGGTTTTTGATGTATGTTTGTTGGGTTAGGGTGAAGCCGGAGACTTCAGAAGACAAATCATATTCTCACTTTACTGAATTATTCTCCGTGTTTATACGTAGTCGTGGATTTCTGTTTCTGGgttttcaaaacaaatgcaaagcaAACTTTTCACGTGGCGATATTACGTACAAAGTCGATGCaaagacagttttttttccagcattttggaagctttttttttttttttttaca

Function

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19731 lncRNA downstream 3684 5416056 ~ 5462266 (-) True G14714
TU19719 lncRNA downstream 69515 5329751 ~ 5396435 (-) True G14706
XR_005637379.1 lncRNA downstream 104727 5360705 ~ 5361223 (-) False LOC120549375
TU19728 lncRNA downstream 104734 5360705 ~ 5361216 (-) True LOC120549375
XR_005637378.1 lncRNA downstream 104775 5360705 ~ 5361175 (-) False LOC120549375
TU19779 lncRNA upstream 146 5472733 ~ 5477391 (-) True G14735
TU19755 lncRNA upstream 37934 5510521 ~ 5512031 (-) True G14722
TU19766 lncRNA upstream 76367 5548954 ~ 5550874 (-) True G14723
TU19769 lncRNA upstream 82887 5555474 ~ 5558816 (-) False col4a4
TU19791 lncRNA upstream 160921 5633508 ~ 5674273 (-) True G14746
XM_039819337.1 mRNA downstream 139192 5301805 ~ 5326758 (-) True LOC120570786
XM_039778857.1 mRNA downstream 198655 5252994 ~ 5267295 (-) True LOC120544953
XM_039820686.1 mRNA downstream 490368 4949179 ~ 4975582 (-) True LOC120571626
XM_039819581.1 mRNA downstream 795916 4661614 ~ 4670034 (-) False LOC120570840
XM_039778893.1 mRNA upstream 4393 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 17403 5489990 ~ 5510035 (-) False LOC120554300
XM_039792528.1 mRNA upstream 43072 5515659 ~ 5535486 (-) True LOC120553850
XM_039788062.1 mRNA upstream 85776 5558363 ~ 5639200 (-) True col4a4
XM_039821091.1 mRNA upstream 289607 5762194 ~ 5771638 (-) True LOC120571926
TU19530 other downstream 160581 5214769 ~ 5305369 (-) True G14553
TU19570 other downstream 353971 5062988 ~ 5111979 (-) True G14579
TU19434 other downstream 686860 4734249 ~ 4779090 (-) False G14552
TU19742 other upstream 16669 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 38129 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 230800 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 829762 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1548396 7020983 ~ 7032467 (-) False atg16l2

Expression Profile