RNA id: XM_039785128.1


Basic Information

Item Value
RNA id XM_039785128.1
length 2271
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC120548705
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12876587 ~ 12907961 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACGGGGAGCGGAAATGGGCCGGACCTTTCGGAAAGGAGAGGGTCTGATCTGCGCACGCATCGCCGACACTCGCGCCTGCTCTCACGCGCGCTTGGTGTGCTATACCTTTTTGGAGCAGCTCGAGAcctctaaaaaaagaaaacatgagcAGCTCGGTGACATCCGAAGAAGCGACGCCGAAGTCGGTCTTCGTTTAGAgccttcctcctcatcctcatcctcatcatcacccGCTACAGACCGGCTGCGGCCGCTCCGCGCGCACTGCGGCGCTTTGAAAACCTCGGAACAACAGGGCGCGCGGCCACTTCTCCTCTGGTCCGCCGTGGCAGGAATGATGCTCGCGCTCACCTTCACCTGCCGCGCGCTGCTCGTCTTCCTGCTGTCCGACTCGGTCCGGACCGACAGAACAGCGCCTTTCCTGATCACACAGAACATGTGGCCTCGCGGCTGTGTCCTGGACTGCCAGAGGGGGCGCCACAGAGCCGTGTGTGGCAGTAACGGCAGGTTGTATAAATCGATGTGTGCCTTCCAGAGGGCCCAGTGCATCAACACGCAGCTCCGCCTCGCTCCACAAGCACACTGCTCAGATCCAAGTCTGTCCAAATGCCAGCTGGCCCGGGCTCAGGCCCTGGAGACCAGCACCCACGTTAGCCCAGGAGCTGCCATCTTTGTGCCTGAGTGCAGTCCGGACGGTCACTTCCTGCCAGTGCAGTGCCACAGCCAGACCGGATACTGCTGGTGCTCCATGCCCGACGGCAAACCTGTCAGCGGGACCTCGGTCCTCCATCTCACCCCCAACTGTACTGATGATGTTGGTGAACCTGGGCCTACACTGGATCCCAGAAAACATGCAGAGCTGACTGCTCCTCCGAACTGTGTGACCATCGTGCTCATCTCTGACCCCAAATGCAAGCGCTCCGACAGACGACCCACTGaCAGTGCTCAGACGTGTGATCGTGAGCGAGCGTCGCTGCTCTCTCAGATGAGTTCATCCTGGCAGGAAAAGCGTTTCATCCCAGAATGCAGTGCAGACGGCCGCTATAACCCCGTGCAGTGTCACGCTTATACAGGTTactgttggtgtgtcagggtgGACAGCGGCAGGCCGGTACCAGGCACCTCTGCAAGGAATCACATCCCAGAGTGCCCTGGGGCCAAGGAGGCACCGACACGCAGGAGGTACGGGGAAAGACCTCTGCCTGGGTGTCCAGGAGCTCGTAAGAAGCAGTTCCTACAGAGTCTGGTTAGAGCTCTGCAGCTGGAAGCAGAGCATGCTGGAAGTTTGAGTCCCTACCAGGCCTCAAACACCCTTCCCTCcagctctccctctccatctttGAACGCTCCACCCTCCTCCaccccttcctcctccactctGGACGTGTCTTCTCCTGCTGCTCTGCAGGCTGTAGAGGCCTCCGGGCCAGAGGTTGTGCTGCGGTGGCACTTCAGTCAGCTGGACGTGGACTCCAGTGGGGTGCTGAGCGAACGCGAAGCTCGACCTCTGCGGCAGTTCCTGCGACAGAAGCTGAAGCCGCGACGTTGCGCCAAGAAGTTTGCTCAGTACTGTGACATGGACAGAGACCGAGGCCTGACGCTGGAGGAGCTGAGGGTCTGCCTGGGCCTCTGAGCCAGGGAGCAAACAGACAAATCACCCGCTGCCAAAGGCCCACTCCTTTCCTACCGCTTCACTGTCACCTTTCAAGGTTCTCTTTATTCATccattaaatgaaaatgaacataGAAGGACTTCAGCTGCCTCTGGCTGTATTGGTGTCACCGTACTATATCTATGATATAACCCTCTTATAGTTACTCCAAGTCGACTGTCAACTTCAAAATAAGGAATTTAGGGTGAAGATTGGGATTGGGCCTCACTCTTGGTGACTTTTCCTTCCCAAAAATCCTCACCTCCTTCCCTTAATCCTTGCCTCTTTCTCTTCATCCCTCTCTGCTTTGTACATACTTTGCttattttatatacatattgCCAAGATATTGATGTAACATATTTAGATACACATTTTGATCAATGGTAAATTCATAATTTTATATACAACCTTTGTACAACATATCAGTCTGCAGCACTTTCTCAGACACTACATTGTtttctgattgattgattgattgattgattgattgattgattgattgattgatagataAAAGTCATTTCCAGCTTTTGATTACCTGATGTTTGTAAATGTTCTTTCAATAAATGGACTGCAGCAGCGACGCTGTGAACATTGTTTGCCAGTAATCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22721 lncRNA downstream 53665 12822429 ~ 12822922 (-) True G16676
TU22720 lncRNA downstream 198039 12664199 ~ 12678548 (-) False slc8a2b
TU22712 lncRNA downstream 246672 12629572 ~ 12629915 (-) False LOC120544465
TU22555 lncRNA downstream 300004 12576233 ~ 12576583 (-) True G16554
TU22527 lncRNA downstream 432578 12443629 ~ 12444009 (-) True G16531
TU22744 lncRNA upstream 107664 13015625 ~ 13137068 (-) False G16688
TU22746 lncRNA upstream 107664 13015625 ~ 13137068 (-) False G16688
TU22739 lncRNA upstream 165658 13073619 ~ 13137068 (-) True G16688
TU22737 lncRNA upstream 191576 13099537 ~ 13137068 (-) False G16688
TU22738 lncRNA upstream 191576 13099537 ~ 13137068 (-) False G16688
XM_039779394.1 mRNA downstream 20860 12664199 ~ 12855727 (-) True slc8a2b
XM_039779404.1 mRNA downstream 20874 12664199 ~ 12855713 (-) False slc8a2b
XM_039782949.1 mRNA downstream 214397 12654605 ~ 12662190 (-) True srsf7a
XM_039782960.1 mRNA downstream 214399 12654605 ~ 12662188 (-) False srsf7a
XM_039778254.1 mRNA downstream 225512 12637723 ~ 12651075 (-) False LOC120544471
XM_039823070.1 mRNA upstream 3537 12911498 ~ 12983519 (-) False actn4
XM_039823043.1 mRNA upstream 3537 12911498 ~ 12983519 (-) True actn4
XM_039823054.1 mRNA upstream 3537 12911498 ~ 12983518 (-) False actn4
XM_039823060.1 mRNA upstream 3537 12911498 ~ 12983518 (-) False actn4
XM_039823035.1 mRNA upstream 3537 12911498 ~ 12983518 (-) False actn4
XR_005637072.1 other downstream 214397 12654605 ~ 12662190 (-) False srsf7a
XR_005638514.1 other downstream 310542 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 311695 12564729 ~ 12564892 (-) True LOC120554484
XR_005638508.1 other downstream 314088 12562309 ~ 12562499 (-) True LOC120554559
XR_005638463.1 other downstream 315141 12561283 ~ 12561446 (-) True LOC120554479
unassigned_transcript_89 other upstream 91006 12998967 ~ 12999039 (-) True trnak-uuu_3
unassigned_transcript_91 other upstream 96256 13004217 ~ 13004289 (-) True trnak-uuu_5
TU22775 other upstream 340642 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 414907 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 754946 13662907 ~ 13754616 (-) False si:ch211-14c7.2

Expression Profile