RNA id: XM_039785292.1


Basic Information

Item Value
RNA id XM_039785292.1
length 2812
RNA type mRNA
GC content 0.52
exon number 7
gene id ehd2b
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47158045 ~ 47170349 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCAGAGTGTTGGTGCTGCCCACAGTGTTGCCAGGCATCCCTGGAAGAGGAGGTGCATTAAATTTGGAGAAGCAAGCCAGGGGAGAGTGAAGAAGTTGGCCTcagtgtggtgtgtctgtgtctcactGTTTTCCTTGTGCTCTTACGGAACCTTTTGCCAGATTTGGAGCTCATCTGAAATCCATTTAAACCCCTGGAGAAGAAGGATCGCCTGTAATCTGGCTGCGTTGATGCTCCACTGAGGGTTCCTATTTGCCGTCAAAGAGGTGTATATACATGTAGCAGCAGCTCCTCCAAGAGACTGTTTTCTGTCTCCTCAAGTCCAAATATTTTCCAAGCTCCAGAGGGCAggactgcagagagagagatcaaGACGCTTGAAGGCTGTGCTTTCTCCATAATAACTTGGGGCTAAAAGTGATCAGTGTGGCAACTGTTGTCGAAGGGAGAGACTTGAAACAGAACATCGGCCCTATCGTTCCTCTCGGCGTGTGCGCAGGAGGTTTCAAGGACAAGTGAGCAGCGTTCACACAAATACAGGAAACACCTGAAGGTTTTCCAAGGTTCCAGCCACAGGAAATACAGCTCCAAACAACAGACGCACTCTGacactgatatatatatatatatatatttttttatttattttttattttttgtaagaaGCTCAATCAACATGTCCCGCTGGGGGAGAAAAGATGTGAAGAAGGCCCCTGAGGTGATCCGCACCGTGACAGAAGGGCTCAAGTCCTTGTATCGCAAGAAGCTGCTGCCTCTGGAGGAGTACTATGGTTTCCATGACTTCCACTCTCTCAGTCTGGAGGACGCGGACTTCGATAACAAGCCTATGGTGCTGGTGGTGGGACAGTACTCCACTGGAAAGACAACGTTCATCAAGTATCTACTGGAGCAGGATATTCCTGGGAGCAGGGTGGGACCCGAACCCACCACCGACTGCTTCACTGCCATCATGCACGGGGAGGTGGAGGGAGTCATCCCCGGGAACGCCCTCATCGTAGACCCCAACAAGCCTTTCCGCAAACTCAACCCTTTCGGAAACACCTTTCTCAACAGGTTCCAGTGCGCCCAGATGCCCAACCAGGTCCTGGAGAGCATCAGCATCATCGACACGCCGGGGATCCTGTCCGGGGCCAAGCAGAGAGTGAGCAGAGGCTACGACTTCCCGGCGGTGCTGCGCTGGTTTGCCGAGCGCGTGGACCGCATCATCCTGCTGTTTGACGCCCACAAACTGGAGATCTCGGACGAGTTCTCCGAGGCTATCGGCGCCCTGAAAGGCAACGAGGACAAGCTGCGCGTGGTGCTCAACAAGGCCGACATGGTGGGCACCCAGCAGCTGATGAGGGTGTACGGCGCACTCATGTGGTCCCTGGGGAAGGTGTTTGGCACCCCGGAGGTTCTGCGCGTCTACATCGGCTCCTTCTGGTCCGAGCCGCTGATGGTGGCCGACAACCGGAAGCTGTttgagctggaggaggaggatctGTTCGCCGACATCCAAAACCTCCCTCGCAACGCAGCTTTACGCAAGCTCAATGACCTGGTCAAGAGGGCGCGTCTGGTCAGGGTCCATGCCCACATCATCAGCTATCTGAAGCAGGAGATGCCTTCTGTCTTCAGGAAGGACAACAAAAAGAAGAATCTGATCTACCAGCTGCCAGTGATTTTCTCGAAGATCCAGCTGCAGCACAACATTTCTCCCGGAGACTTCCCAGACTGTGCCAAGATGCAGGAGCAACTGATGGTTCACGACTTCTCCAAGTTCAAAACCTTGAAGCCCAATCTGATGATGGCCTTGGACGAGTTGCTCTCCGCGGACATCTCCAAGCTGATGCCCCTGCTGCggcaggaggagctggaggcaGGCGAGCAGCCGGGCGTGCAGGGCGGGGCCTTCATCGGGACCCGCGCCGGGCCGTTCGGGGAGGGTGACCCCTTCACTCTGGAGAACGGAGAGGGAtgcgaggaggaggaagactgGGTGGTGACCAAAGACAAGCCCAAGTATGACGAGATCTTCTACAACCTGGCTCCCAGCGAGGGGAAGCTGAGCGGCAACAAGGCCAAGGACTGGATGGAGAGCTCCCGCCTGCCCAACTCGGTCCTGGGTCGCATCTGGAAGCTGTCCGACGTGGACCACGACGGCATGCTGGATGACGAAGAGTTTGCCCTGGCCAGCCACCTGATCGAGGTGAAGCTGGAGGGCCACGGCCTGCCCCCAGAGCTTCCCACGCGCCTGATCCCGCCCTCCAAACGCAGGCAGAAGGGTTCGGATGCATAGACATGACACAAGTCCCTGGAGCTGAGAGAGACTCTTCTCTACGGGCTGTGCCACCGTTTGTAATTGCTCTTGTCTTCTCCCCAGACCCACGTCAAAACGTTTGTATGTAATGcgtttagagctgcaaagattaatcgattagttgtgtCAACTAATTAAGTCATTTGccaattattttgataatcgataaatcggtttgagtcatttgttatggggggaaaaaaaatgaaaacttcTCTGATTCCATCTTgtttaatgtgactattttctagtttcttctctcctctgtgacagtaaactgaatatctttcagttggggacaaaacaagacatttgaggacgtcatgtCGGGCTTTGGGGAACACCGATTGACATTTTTTCTACCGtttcctgacattttagagaccaaacaactaatcgattaaccgagaaaataatcgacagattgattcagctacagtacaggccaacagtttggacacaccttctcattcaatgtgtttctttatttt

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32958 lncRNA downstream 382 47109647 ~ 47157663 (-) True G24489
TU32823 lncRNA downstream 129434 47028256 ~ 47028611 (-) True G24378
TU32822 lncRNA downstream 137970 47019238 ~ 47020075 (-) True G24377
TU32821 lncRNA downstream 141563 47016278 ~ 47016482 (-) True G24376
TU32806 lncRNA downstream 150218 46962918 ~ 47007827 (-) True G24361
TU32970 lncRNA upstream 24141 47194489 ~ 47198862 (-) True G24499
TU32964 lncRNA upstream 34885 47205233 ~ 47206787 (-) True G24494
TU32974 lncRNA upstream 37193 47207541 ~ 47207790 (-) True G24503
TU32975 lncRNA upstream 38106 47208454 ~ 47208835 (-) True G24504
TU32976 lncRNA upstream 39859 47210207 ~ 47210412 (-) True G24505
XM_039781949.1 mRNA downstream 7435 47143741 ~ 47150610 (-) True psmd8
XM_039824274.1 mRNA downstream 15449 47134854 ~ 47142596 (-) True bet1l
XM_039824258.1 mRNA downstream 23344 47118397 ~ 47134701 (-) True exosc5
XM_039780274.1 mRNA downstream 1253038 45872223 ~ 45905007 (-) True akap1b
XM_039785500.1 mRNA downstream 1296953 45821489 ~ 45861092 (-) False cuedc1b
XM_039786367.1 mRNA upstream 1879 47172227 ~ 47188363 (-) False bicra
XM_039786369.1 mRNA upstream 1879 47172227 ~ 47188363 (-) False bicra
XM_039786362.1 mRNA upstream 1879 47172227 ~ 47188363 (-) False bicra
XM_039786352.1 mRNA upstream 1879 47172227 ~ 47188363 (-) False bicra
XM_039786344.1 mRNA upstream 1879 47172227 ~ 47188363 (-) False bicra
TU32961 other downstream 15496 47134857 ~ 47142549 (-) False bet1l
unassigned_transcript_136 other downstream 2231589 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 2231886 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 2232487 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 2232785 44925188 ~ 44925260 (-) True trnar-acg_8

Expression Profile