RNA id: XM_039785396.1


Basic Information

Item Value
RNA id XM_039785396.1
length 1999
RNA type mRNA
GC content 0.50
exon number 10
gene id arcn1b
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16564562 ~ 16579654 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTATCGCTGCTCTTCCGGTGGAGACGTGGCTCTGTACTGCTGCCATATtgacgctagctagctaacaatcACACAACTTGGAGTCAGCTGTATATCTGCACCTTGCTATTCTAGAGTGACTAGAAATCACAAAAATCAAGAAACACGAGAGACGGAAGATCGTCCTACCATAGAGAGAGACCAAAATGGTGCTGTTGGCAGCGGCGGTGTGCACCAAGGCCGGCAAGGCCATTGTATCGCGGCAGTTTGTTGAAATGACCCGGACCCGTATTGAGGGTCTTCTGGCTGCATTCCCTAAACTGATGAACATGGGCAAGCAGCACACCTTTGTGGAAACAGACAGTGTTCGCTACGTGTACCAGCCACTGGAGAAACTCTACATGGTCCTCATCACTACCAAGAACAGCAACATCCTGGAAGACTTGGAGACACTCAGACTCTTCTCCCGTGTGATCCCAGAGTACTGTCGTGTGCTGGAGGAAAGCGAAATATCGGAGCACTGCTTTGACCTGATCTTTGCCTTCGATGAGATTGTGGCACTAGGCTACAGAGAGAACGTCAACCTGGCTCAGATCCGCACCTTCACAGAGATGGACTCTCATGAGGAGAAGGTTTTCCGTGCTgtcagagagACCCAGGAGAGAGAGGCCAAggcagagatgaggaggaaggcCAAGGAGCTGCAGCAGGCTAGAAGGGATGCTGAGCGCTCTGGAAAGAAGGTGCCAGCTTTCGGCGGCTTTGGCAGCGGCGGCATGACCAGCGTCTCGTCTGGGTCCATCATTACAGACACCCTCGTCGAGCCTGAGAAGCCCAAGATCACACCAGCTACAGTCAGACCAAGTGGACCCAGTAAGGCCCTGAAACTGGGTGCTAAAGGGAAAGAGGTGGACAACTTTGTCGACAAGCTCAAGTCCGAGGGTGAAACCATCATGCCCACCTCAGGAAAGAGAGGCTCAGATGTATCTAAAGTTCTACCACCACCAGTCAATGTGGAGAGTGTACATCTGCGTGTGGAGGAGAAGATCTCGCTGACTTGTGGACGTGACGGCGGCCTACAGAACATGGAGCTGCTGGGCATGATCACGCTCCGAGTCACAGACGAAAAGAGCGGACGCATCCGCCTCATCATCAACAACAATGACAACAAAGGATTGCAACTGCAAACCCATCCCAATGTGGACAAGAAGTTGTTCACTGCTGACTCAGTGATTGGCCTGAAAAACCCAGAGAAGTCCTTCCCTCTCAACAATGACGTTGGTGTGCTGAAGTGGAGACTACAGTCCACAGACGAGTCCCTCATACCTCTAACCATAAACTGCTGGCCTTCAGAGAGTGGTAGTGGCTGTGATGTCAACATCGAATACGAGCTGCAGGAGGAGAGCCTTGAGCTCAACGATGTGGTCATCAGCATTCCTGTACCGTCTGGTGTGGGAGCCCCTGTGATTGGTGATCTGGATGGCGAGTACAAACATGACAGCAGGCGAAACATTCTGGAGTGGTGCCTACCGGTCATCGATGCCAACAACAAGACCGGCAGCCTGGAGTTCAGCATCGCCGGACAGCCCAATGACTTCTTCCCTATCAATGTGTCCTTTGTGTCCAAGCGCAACTACTGCGACATCCAGGTTACCAAAGTGACTCACGTAGATGGCGACAGCTCCATTAGATTCTCTTCAGAAACCTCCTTTGTTGTCGACAAATATGAAATCCTGTAAAGAATATTCAAAGAAAAcgtcaaaatcaaaaaaaaatcaccaacaaaaaaaaaagtccaaatctatGCTTCAGAGAAAGATTGAAGTTTTCTTGCCTGCCCACCCTGTATACTATTTCAGAGACTGTGTACATCGACAGGACTACGTCAGCCCTCTGGCAAAGCCTCTTCCTGTGGTGGAGCAGAGCAGTGGTGGTGTATTTATATGTTTGTATGAGAGAGAGGATCATCTATATATAGAGTTAATTGAACAGGAAAacccaacaaacacacaaaaaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23886 lncRNA downstream 145820 16417295 ~ 16418742 (-) True G17499
TU23849 lncRNA downstream 163726 16400623 ~ 16400836 (-) True G17466
TU23748 lncRNA downstream 516546 16016922 ~ 16048016 (-) True G17389
TU23597 lncRNA downstream 845521 15710784 ~ 15719041 (-) False G17287
TU24024 lncRNA upstream 117159 16696813 ~ 16698009 (-) True G17571
TU24054 lncRNA upstream 131115 16710769 ~ 16766469 (-) True G17579
TU24067 lncRNA upstream 140564 16720218 ~ 16935713 (-) True G17583
TU24076 lncRNA upstream 141920 16721574 ~ 16736425 (-) False G17587
TU24077 lncRNA upstream 141920 16721574 ~ 16755316 (-) False G17587
XM_039791847.1 mRNA downstream 4494 16441097 ~ 16560068 (-) False phldb1b
XM_039791880.1 mRNA downstream 15312 16441097 ~ 16549250 (-) True phldb1b
XM_039791889.1 mRNA downstream 20939 16441097 ~ 16543623 (-) False phldb1b
XM_039791911.1 mRNA downstream 36832 16441097 ~ 16527730 (-) False phldb1b
XM_039791939.1 mRNA downstream 36833 16441097 ~ 16527729 (-) False phldb1b
XM_039785973.1 mRNA upstream 12665 16592319 ~ 16596088 (-) True LOC120549238
XM_039785575.1 mRNA upstream 20140 16599794 ~ 16643883 (-) False ubash3bb
XM_039785572.1 mRNA upstream 20140 16599794 ~ 16643883 (-) True ubash3bb
XM_039785583.1 mRNA upstream 20140 16599794 ~ 16643191 (-) False ubash3bb
XM_039784169.1 mRNA upstream 64466 16644120 ~ 16655340 (-) True LOC120548132
XR_005637173.1 other downstream 504154 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 504154 16049872 ~ 16060408 (-) False sdhdb
TU23600 other downstream 850299 15695554 ~ 15714263 (-) False G17287
TU23589 other downstream 850299 15702609 ~ 15714263 (-) True G17287
TU23599 other downstream 858107 15695554 ~ 15706455 (-) False G17287
TU24093 other upstream 268507 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 894082 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 1552433 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 1625928 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 3223059 19802713 ~ 19810130 (-) False si:ch211-11n16.2

Expression Profile