RNA id: XM_039785453.1


Basic Information

Item Value
RNA id XM_039785453.1
length 3628
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC120548947
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10405189 ~ 10424770 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCGCGTTcaagggagggaaaaaagaaaTCGGAGTCTGCGCAGTAGGGTTTGTTCTCGACACTCCGAACTTTCGGGAGAACCgcggaggaaggaggagagggagagaacaaCGCCATTTTTTCTGGCCCTGTGCAGTCAGACAGGTGTCTTCAGTCCAGGCTGGCGGGTGGCTCGGGACCAGACAGTCCTggtgtggggtggggtgggcGCTGAGATCTGGACTCTTGTACCAAACTGAGTTGTAGCGGGCTGTGAGCGGCGGCGTCGGCGGAGAGGGAGAGGTCGAGGCTGGAGCCATGTCGTCGGCCTTGTGGCGCGAGGACGATGAAGAGTTTAAGTTGGGAGCGGTGAGAGCCGCGGGGGCGAGAGGCAAGCCGAGGTTCTCCATGACGGAGATCAAACTGCTGCTGGAGGCGGTGAAAAGGAACAGATACATCCTCCTCAAGAAGTTTAACCAAGGCGTGTCGGCTGAAGCCAAGAAACAAACCTGGACTGAAAtcaccaatcagatcaacggtCTGGGAGAGAATCACAGAGAGgTGCGTCAGATCATGAAGAAATGGGCCGACCTGAAATGTGATGGCAGGCGAGCGCTCCGGGGCCCCAACGGCAGCAACGTGAGGAAGAAGAGCATGGGCCCCGTGGAGAGGATGGTCCACAAGATCCTAATGATGAGTCCCAGAGGAGGTGGCGAAAGTGATTTTGACCTCGACGAAGAGGACGATTTTTCAAAGGTTTACAGCAAAGGCCCGCCCCCCAATGCCCCCCCGTTCTCCTACCTCAGCTTGACGGACAGCTCCCAGTCTATACCCGGAGGAGCCTCCTACgacttctctcctctctcctccccggAGAAAGATCTCGCCGGCGATCCTTTCTACTCGTCCCCTGACTTTGACCTGGCTGACGATGGAGACCACACCATGGACTTTGAAGAGAACGACGACTCCTTGTTCTCCTCCTACCCTTCGTCTCTCCCCCGGCCCGCGTCCCCGTCTCTGGACCCGCTGCCCGACAACGCCCTGCTGAGGATGAAGCCGGTCCACACCTACTCCCGAAACAGCCAGAACCACACCACCCCCCAGAACCACAACACCTCCCCGAGACCTGCACCTGCTGGACCCTCGGCCCCCCCTTTCCCTCCAGACGcagcctcttcctcctcctcttcctcggcCGCTCCGCCCCCACCGGAGCCCTCCTCAACCTCCACCATGACTTTCTCTTCCCTCCTTGCTCCTTCCTCCTCATTCACTCCCCCGCTTCCTCCTGCCTCCATCTCTgcatctccttcctcttcttcaccCTCTAAAtctgtccctccccttcctgcCGCAGTATCTTCCTCCTCCGTTGCTTCCAACGCAGCCTCTTCCAACTCCCATCAGCcgtccccctcctcctcttcctcagtcCTCCCACCcaatcctcctcctccctccgcCGCCGCCGCAGGCCCGGGCGCCGCGTCGGACCCTCTCCCGGGCGGAGCGTCCCAGCGCCGGGCCCGCGAGCAGGTGGCCCAGATGGCCAATcagagcctgcagcagcagcgcgCCAGCCGCATGCTGCTGACCTCGGTGTCCCAGTCTCTGGAGGTGCTGGCCCAGTCGGTCCAGCTGCTGGTGGAGAGCCAGCAGGAGTTCGTGCAGGAgtctctgctgctgcagagGGAGACCGTGGACGTCCTGAGGGATTTCTCCAACACGGCGCTCACCATGCTGAGGGACAAAACCAACGGGGGCCAGCTGCCGCATCCTCATCCCGCCGCGCACTTCTGAGGAAATGGTATCGCGAACCAAAACCAAGTGCAGGTAAATTGGCGGGTAAATGTTGGCAGCATTACAGGCGATCAGCCGGCACGTGGAGGGGATTTCAAACCTCCTTCCCTCTCGTTGGTCTAATCGTGAAAAGAGACGGCTGACTATTTGATGGCTGCTGGACAGAAAAGTTTCTTCCTGAAAATGGGACAAAGTTTTTGCCCAAAGGCACAAACACACGAGTTTTAAGCCattatttcaacgtttttttggtttttttttgagACGTGCCTGCATCTTTCTTCTATTTCTTCTTCTTACATattcactgtttgtttgttgcaggctcgtgttttttttccacactgTAAACAATTTTTACTGTAATGTGTCAGTAGAGTATGAAAGTACTAACTAGGGCTGCTGaactattattttcatagtcgattaatctgttttattattttctcgattaatcgattagttgtttgataaaatgaaatgtcagaaaatggtaacAAATGTTGATATCTGTCTcccaaaactcaaagatattcaggttcctgtcacagaggagcgaagaaaactagaaaatattcacatctaACAAGctcacctttttctttttttcctaaaaaaGGACTCAAACCAGGTTCAAGGGGACTGTTTTTCTGCTTAAGTTGGAGACGTGGTAACATTCTGagtgttttcttaatttgtctAAAACCTGCGGAAGATTCCGCGGAAAACTCTGCGACCGCACATCCAGTGCGGCCCTGCTCATCGCCAACCACGTCCGGTCCACATCCTCACACCGGATGCTGCGGTGGTACATGTCAGTGATGCAACAGCCACTTTTGAGAacaaatattataataaaaacactttttttttttttctttttaattgatATGTTTTGTGGAATTTACTGCGGTTAATGAAAATAACTTGCTTCTGTAATTTCCAAAGGGTTCATTTGAGTGGTTTTTCAGAATAAAGGACTAATTGGTTCTTGTTTTATCCGTTAGATCTAATAATCCTCTCATATTGCCCACCATTTAAAGCAGTATTCTTGTTCTAGATGAAAACACTGAAGGTGTGAATTGCAAAGTGGCCGAAATTGTGCTGTTAACAAGACTTTTGAATGAGAATAAAACCGTCTACTATGCAGTGGATGGAGGAAAATATTAGTGAAATTGTTAATGGAAATATTAACGTGACAGCAAGCCAATGTTGCAGCTGGCGCGCACTGAGAGTTCATACCAAGCTCTGCATGTGTTAGACTGTGAGCCGCTGTGGCCTGTGGCAAAGCGAGCTGATTTTTTATAACGTAGATATAATATAGAATAAGCTTGAGCTAACCCCCTGCAGAAAATTGTCTGCCTCCGTAATCCTTCACCTCAGCCTGGCAAGCgtcacatttctgtttttgatTTATGAACGTTTCTGGAAAGACTTATTAAATCTCCAGGTCTGTTTTTGAATTTGATACAAATAGCAGTTTATGGGAGATTCCGCTGTTATTTACAACCACCTATGCATTTTGTGGTGTCAAACCCCCCAATAAACAACCCAAATATTCAGTGGAGAAGCTAAGACGGCCGCGTGAGCCTGGAAACATGTTAGTATTTCAGATGTTCTGCTTTTTGAAACTCTTTGTCCTCTGACCCTCTTCTTTGTCCCGCTCGTAGCATAGTAGTCTAAATCTGCAGACTGTCCCTAGTTGAACATGTTTCCTCACTTGCAGTTGGCTTtgtgtctgactgactgaccaAATGACTTGTAACTGTCTGCTGTAACACCAGGCTATGTGATGTTTCCTTACAACCAAATCCTGAGAATAaagattttattattaaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21809 lncRNA upstream 11219 10393420 ~ 10393970 (+) True G16103
TU21806 lncRNA upstream 17201 10387672 ~ 10387988 (+) True G16101
TU21744 lncRNA upstream 209979 10188963 ~ 10195210 (+) True G16048
TU21739 lncRNA upstream 219504 10183693 ~ 10185685 (+) True G16044
TU21727 lncRNA upstream 238720 10139003 ~ 10166469 (+) True G16033
TU21813 lncRNA downstream 45007 10469777 ~ 10505338 (+) False zgc:101731
TU21826 lncRNA downstream 76761 10501531 ~ 10553760 (+) False G16115
TU21829 lncRNA downstream 76761 10501531 ~ 10553417 (+) False G16115
TU21835 lncRNA downstream 76761 10501531 ~ 10502378 (+) False G16115
TU21836 lncRNA downstream 76761 10501531 ~ 10553760 (+) True G16115
XM_039784386.1 mRNA upstream 3639 10388232 ~ 10401550 (+) True zgc:101731
XM_039787317.1 mRNA upstream 28378 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA upstream 28378 10359431 ~ 10376811 (+) False LOC120550666
XM_039779289.1 mRNA upstream 285350 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA upstream 285350 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039782658.1 mRNA downstream 9715 10434485 ~ 10445489 (+) False LOC120547173
XM_039782652.1 mRNA downstream 9716 10434486 ~ 10445489 (+) True LOC120547173
XM_039782670.1 mRNA downstream 9716 10434486 ~ 10445489 (+) False LOC120547173
XM_039782666.1 mRNA downstream 9716 10434486 ~ 10445489 (+) False LOC120547173
XM_039788464.1 mRNA downstream 30987 10455757 ~ 10464353 (+) True LOC120551211
TU21270 other upstream 401594 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 439415 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 439415 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 460744 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 520585 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 1131537 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1132682 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1135621 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1137486 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1469734 11894504 ~ 11900873 (+) True G16267

Expression Profile