RNA id: XM_039785813.1


Basic Information

Item Value
RNA id XM_039785813.1
length 5251
RNA type mRNA
GC content 0.55
exon number 18
gene id rsf1a
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12419105 ~ 12438539 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCGCACAGTCGCATCCTAGCAGCGAGCCCTCCCCTCCTGTTTCTCTCCGCCTGGAAAGATGGCTGCTCCGGTGGTGGTGAGAAGCTCCGGCCCGGCGCTCTGCCCGAGCTTCGCGGAGGTCTGTTCGTTCCTGGAGCGATTCGGAGCGGCGTTGGACTTGCCCGAGATGACTTACCCACAGATGGAGAGGTATCTGCGGGACACAACGACCGTTCCCAAACCCCTTGTGGAGCTCCATGTGAAGCTGCTCAGAAAACTGGGGAGGTCTGTGACTACTGATCGCTGGGAAAAATACCTGGCTAAGGTTTGCCAGGAGTTGAACAGTACCTGGGCATGGGAGCTGGAACAGAAGGGCTACCAGGAGATGTCCATGGAGTGCAAGTCATGCATTCTCAAATATCTCTGCGAGTGTCAGTTCGATGACAACCTTAAGTTCAAGATGGCGATTAATGAGGAGGAACCGGAGAAGATGCGTCTGCAGCCTATAGGTCGGGACCAGCAGGGCCTGATGTACTGGCTTCAGCTAGACCAGGAGCAGAATATCCGGCTGTACACGGAGGAGCAGGACGATCTGGACGGATCCACCTGGAAGTGCATCGTCAGGACTCGTAACGACCTAGCTGAGGCTCTGGAGCTGCTGAAGTCCCAGGTTGAACCAAAACAGaatcaagaccaagaccagaacCAGGCTGGATCCAGGATTGCCAGCCCCACAGAGAAAGATGCAGGGAACGATGCCATTGGTAGCACAGACCCTGAACCCTCCAAGACCACAGAGGAACACACTGACCGTGAGAAGGTTGACCCTGTGAAAGAAGAGGAACTCCTAACACCAGTGATAAAGCTGGAGGAAACTACCAAGCAGGAAAACCCTGAGGCTGAGGTGAAAGAAGAGAAGACGGACCACAAATCATCGCCTGTCTTTGATAACCGCGTGAGCACGATCACCACCATCCTCAAATCAGAATCCAGGGACCCTGACGCTCCCAAAAACGCTGTGTCGGTGGTCATGGCGCCAGGCGCGACTGTGACCAAACCCGAAACGAACAAGGAGGATGAAGTAGAGCGGGCAGTCGTCCGGAGCAACCAGCAGGCCAAGATACCACtgaagaagagggagattaaGCTCGCTGAGAGCTACCACAGCAATCACCttaacaacagcaacagcagtaGTATTATTGTCTGTAACCCGTCAGTGATCCAGACCAAAGACAGTCATGGAAAAGAGGGGAAGTTGCCGAGCTCATTAGCGCCGCCTGGTGGTCCAGCTGCCTCACAACCCCAGCAGCAACAAGTGGTCACTGCATCGAGGCAGGAACTGAGCAACGGGAGAGCGTCTCTCCCCTTGGCGCACAAAGAGGGACAGAACGGAGTCATAGGGGTCATAGGTCAAGTCGGCGTTGTAAGTCATGTAGGGGTTATCCGCAGCCCGTCTGAGCGTCACAGAGCCCCCGGTGCTGAGCAGCAGGAACAAAATGGGCCCAGTTTGGACCACAGAGGCtccagagctgtggaggaagagagggaggtgaGCCGGCAGTCAGTGCTGGTAAGGAAGGGACCGGTTGAAGGGGagacggcagcagcagcagccaccgctcttcctcctcctgcagcGGTGGAGGCTCAAACAGCCAGAAAACTACCGTTGTCATCCTTAAAATCTGATCCACTCTCTGAAGCTGTAGAGAGAAAAGTGGATTCTGTTAGCCTTCCCTCGCTGTCTCAGGCCACAGAAGACCAGGGTCAAAAAGTAACAGAGGAGCAGTTCGACAGGGGgatgaggaaagagaggagaagagaggcgTCTGGGCACCCTGAGGCAGAAGAAGGAAGCAAAGGTGACCATGAAAAGAATAAAAGCACTTTAGGAACGTTGGGGGCGGAATCAGGGAGCACCACTCCACTTCTAAAAGTAGACCAGCAGGATAAAGAGGACCACCAAGAAGACGGGCTCAATGGTGGGTTGTCTGTCCAGGTTAGGGTGAAGGACACTGGGCTTGGATCGGTGGAGAGGCAGGGTCCATTGGAGGAAGCCTCCTCTGAGCTCCAGAAAGAAGGAATCCGGTTGAAGATCAAGATTCCTCCCCACCGGAGAAACAAGTTAAGGGGAAAAGGGgcaaaggaggaggagaaagagagggagcagGAGGTGCAGGAGGATGGGAGGGCGCTAAGGAGATCTGCAAGAATTTGCAGGCCGAGCTCGAAGGTGGCTGAGAGCCAGAGAAagaaaccacaaaaaaaacaggcaCGGCCCGACAGAACGAGGGAcgaagaggatgaggaggaggaggaggaggagggagaagaggaagaagatgaagaggagCTGAGCTCAACTACAAAGAAAGACGGCAAAACAGAACCTGCCAAGCAAATTAGGAAGCAGAGGGGTAAACGGAGGCATCGACGCCCCCGATGGTCCAACATTCGTGCCAAGAGACGCAAACTGAATGAgggagaggaggtggaggacagagggaggaaacgaggagagggggagagtgAAGGAGGGAGCGACTCTGAAGAATCATGTAAATCGGAGGAGATTCCCAGTGAGGATGCCTGCAGTCACTGTGGCCTGCCCAACCACCCTGAACTGATCCTGCTGTGTGACTCTTGTGATAATGGATACCACACTGCCTGTCTGCGGCCACCGCTCATGTTGATTCCAGATGGCGAGTGGTTCTGTCCTCCCTGCCAACATAAGCTGCTGTGTGAGAAACTGGAGGAGCAGCTGCAGAACCTGGACAGTGCtctgaagaaaagagagagagcagagaggagGAGGGAGAGGCTAGTGTACGTGGGAATCAGTGTGGAGAACATCATCCCTGAGGGAGATGAAGCGGAAGAGGAGAAGACTGCAAAAAAGAAAGATCCCAAAAAGAGCAAAAATCTGGGGAGGAGATCAACCAGAACCAGGAAACACATCAGCTACAGgtttgaTGACTTTGACGATGCCATTGATGAGGCTATAGAGGAGGACATCAGGGACCTCTGTGGAGGAGCAGGGCAGGGCAGAGACATCACCGCTATCCTGTCAGAGGACGGGAAGGAGAGCCAGCGGCCAATCAGAAGCCAGGCTCATTCTGCCAGGAACAGGAAGAAGCGGAGGCTGAACGACCTGGAGAGTGACAGCACCGCAGCAGAGAGTGAAGACGAGTTCATGCTCAGcaacagCTCGGAGGATGAGGAATTTGCTGCTTCAGGGGCTGATGATGACGAGGAGGAAGACGAAGATGTGGGCAGCGACGTGGGCAGCTTGGAGAGTGGGGCCCGCCCCAGACGGGCAGTGAGAGGGGTGCCTAAGCACCGACCCAGCAAGACCCAACGCAGGGGCAGGAAACGGCTGAGACGGCGGCGGAGACGCTCCtccgaggaagaggaggaagagactgATGAAGAAATGGGCTCGGATCAGTTCAGCAACATGACTGACAGCGACGATGACAAAAAAAGGCGGGGTCTGAGGCGTGGCCAGCGGCAGCAGGTCAACTATCGCGAGACGTCGGAGTCGTCGGACAACTCCCGGGCCTCCGCCAAGAAGGTCAAAGTCAAACGCCGCGGCAGACCACGCAAGGAGCATCTCTCGAGCGACTACAGCGATGtgTCGCGTTCTTCCAGAGActcggaggaggaggaggattaTGAAGACGAAGAGGAGGACGACCAGAGACGAAGAGTGAACAAGAGGAGAAGACAGGAGGAAGACCTCCGGAGACACAGGACGAGAGAAAAGCCGCGGAGGCGGCTCAAACACGACGAGGACGAGGAGGACGaccgagagagagggaggcggCTGAAAAGGAAACTGTCGGAGAAGGAGAAGGACCGAGACGAGCGGAGGAGGctaaagaggacagaaaaagaagaggaggaccTGGAGAAGATGGGCagggggaagaggagagagatcctGTCACAGCAGCGCCGCAAACGGCTCGCTCAGATGCTGAAAAAAAGGCGGCCTTCGACAGACGACGATGACGAGTCCGAGTCGGACGACTCGGACTCGTCATCGGAAGAGGATCGCCCGGTCCGCAAAAGACTCAACCGAATTgactctgatgatgatgatgaagagggagacgaggaggaggaggaggaggaggaggaagaagaggaggaggaaagacagAAGGTGACGACGAAGAAGGTGGAGAAGAGGGCCGACAGCGACACTCAGGAAAAGGGGAGAGGCCGTAGCCTGTCTCCGTCAAACGGACATCGGACCTCCAGAGGCCCCGCGAAGCCTGGGGCTGGGAGTCCTGCCGTGCCCACGGACAGTGCAGGATCAGGCAGGCAGGGCAGGCACAATGGCCCCTTACagccagaggaagaggaggaggaagaggaggggcaGACAGACTTATTAAACTCTGTCCAGAACAGTCCGCAGTCGTGatggctgtgtttgtgtgaataaCGCTcgcttctttgttttgttttttgttttcttttaactgtcaggactttcaccaaacaaaccacctttttaaaaaactgGATATCTTCTCCCACCTgcgcctcttcctcttcctacTCTCCCGTCCTGCTCTTCCTCCTCGCTGTTGTATTGTGTTAGAGGGTTCTCCGCCGGCACGTACTGTACTTAACAACACAAAGTCACCAGTACGCATTTGCGCTCATCGTCACCTCTGACAGCCAGCCGGTCCGAGAGCATCAGCATCGCTGAGGAGGTCATCCTCAACTCTTTGAGTTACGGacgtgtgtctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcacactggtGGGTCCATGTGGCAGGATGATGGTGCTTTCATCCCATTCGGGCACTGGTTGAATTGGTCACAGGAGTCTGTTTGTAGTGCACCTCATCCTAAAGCACTTCATCACTCTCATAGCACCTACTAACCCACCGCCAAGGAGAGCGTTTTCAGTGTCAAACCAAACCCTTTGGATGATGTGAGCTGATGCTTAGAGACACCAGACTTGAGGAAGCATTGTCTGTCACTTACCTCTAGTGGTATCACCAGCTACCCACGCAGATAGCTCTGCTCGGattttagggctgggcgatatggagaaaatcagatatcacgatatatattcttgaccaaaaaacctcgatatcgatattggcggcgatattctagggtcgacaattggtgctctaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22524 lncRNA downstream 3192 12413484 ~ 12415913 (-) True G16528
TU22518 lncRNA downstream 24268 12394490 ~ 12394837 (-) True G16525
TU22379 lncRNA downstream 153378 12263662 ~ 12265727 (-) False G16435
TU22402 lncRNA downstream 160481 12257150 ~ 12258624 (-) True G16439
XR_005637738.1 lncRNA downstream 163527 12253995 ~ 12255578 (-) True LOC120550509
TU22527 lncRNA upstream 5090 12443629 ~ 12444009 (-) True G16531
TU22555 lncRNA upstream 137694 12576233 ~ 12576583 (-) True G16554
TU22712 lncRNA upstream 191033 12629572 ~ 12629915 (-) False LOC120544465
TU22720 lncRNA upstream 225660 12664199 ~ 12678548 (-) False slc8a2b
TU22721 lncRNA upstream 383890 12822429 ~ 12822922 (-) True G16676
XM_039786745.1 mRNA downstream 7833 12395939 ~ 12411272 (-) False clns1a
XM_039786736.1 mRNA downstream 7833 12395939 ~ 12411272 (-) True clns1a
XM_039782925.1 mRNA downstream 33065 12288657 ~ 12386040 (-) False myo7aa
XM_039782926.1 mRNA downstream 33097 12288657 ~ 12386008 (-) False myo7aa
XM_039782924.1 mRNA downstream 45945 12288657 ~ 12373160 (-) False myo7aa
XM_039788555.1 mRNA upstream 108279 12546818 ~ 12567602 (-) True LOC120551266
XM_039790723.1 mRNA upstream 135138 12573677 ~ 12583611 (-) True med17
XM_039790715.1 mRNA upstream 135330 12573869 ~ 12585498 (-) False med17
XM_039790704.1 mRNA upstream 135330 12573869 ~ 12585497 (-) False med17
XM_039790801.1 mRNA upstream 175342 12613881 ~ 12620514 (-) True ech1
TU22426 other downstream 156330 12225059 ~ 12262775 (-) False G16458
TU22359 other downstream 385343 11989018 ~ 12033762 (-) True G16422
TU22339 other downstream 463527 11949337 ~ 11955578 (-) True G16407
TU21879 other downstream 1994335 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 2088258 10326253 ~ 10330847 (-) False LOC120574316
XR_005638366.1 other upstream 48478 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 50334 12488873 ~ 12489063 (-) True LOC120554526
XR_005638489.1 other upstream 51311 12489850 ~ 12490013 (-) True LOC120554512
XR_005638506.1 other upstream 61444 12499983 ~ 12500146 (-) True LOC120554552
XR_005638495.1 other upstream 64631 12503170 ~ 12503360 (-) True LOC120554527

Expression Profile