RNA id: XM_039786279.1


Basic Information

Item Value
RNA id XM_039786279.1
length 4041
RNA type mRNA
GC content 0.42
exon number 5
gene id msantd4
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 27725434 ~ 27731504 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACGTTAATGATAATGATTTATTGGAGGTGGTGGTAATATAGGCAACACACTACGTTGCATTAATGATTGTGATGATAAAATTGGGTTGTACCCGTCTGGTTAGAAAAATATCTAGCGTAGGCTACCCAAAAAAAACGTTATTTCTGACTAGAAATATTTGGAATATTGAAGGGCATAACCTAGAAGCACAGATTGCGTATAGGTATATTGTCCAGGTGTATGCTAACAGAAGAAACGTACATGTCAAATATAGCCTACTTACAATAGGCTACACTTATGACTGTTTTACTAGGCTATATTCTAACATATAGGCGATTAGATATAGTCGAGATTGTGTGCTTGTATAAATCTAATAGGACAAATACTATCGCATAACTATGTGTGTATGGGAAATTGAAACATCAGCAGGAggcttcattttattttatctttcttACAACCTCAAAATCTGCATTTTGACAGGTATTTTAGTTAATGAGACCACCTTTACTCAAAATGTAACAcaatgaaatgtatttaaagatgattCCCCTACGAAGATCCATAAAATACCCCACCTTTATGGCGTTTCCACTTCCCAAGACAAATAACAAAAATGCTAACACGTCTGCAATTTacataaaaaagaaagtgaaataCTAACTTACTTATgtgatattatattatattagtacttttactttgtatTTACTTCATATTgtaattctgttttttttccatattgttattctacttctctcctttctgtctATCTCTACTGCATATACTACGAGGCCCATTGCATCCCTCCTtggtttctcttttttctttttctttttgtttgagttttgagTTTTTACTTTTCCAAATTGAAGGTCTAAGGACAGAGAATGGCCAATGTTGTACACACTCTAAAGCCCTCTGAGacaaatttgtgattttgggATATATGACAAATTGACCTAACTTGACACACTTTGAATATTCCAAAAACATTAACTACTCTCTGTTTTACATACAGGAAGCCTTTTCAGCCTGTGATGCTTCTCTACCTGTGTACACTTACCTGGCAAATGGGCAAGCCAGGCAATAAAGGGACTGCTGGAGCCACTGAGGGATTCCTCCCTGATGAAAACCACTTTGCTTTTGAAGGAGAGCTGCACTGCTAGACATGGACTAACCTCTAGTCTACAACAATCCACCCCCCATACTCTGACCTGTGATCTATCTCTCTTTGTACATACAGGACCTTCCACCTCTTTGACTCTTTGTTCTCCTTGACCATTCCCCCCAATTGTCTCTTCTTGGTGTCTCTGGGCTTCTTGTCCCTTCTTGCTGCCAAGCTGGATTTCCTGCAGATGAAACAtctgaagaggaagaggaagagcaaCTACAGTGTGAGAGAAACACAGACTCTCATCAGGGAGATCCACAAGAGGACAGACGTGTTGTTCTCCAGACAGCAGAACACAGCCATTAACGAGCTGAAGAGACAGGCATGGGAGGAAGTGGCACGAGGTGTTAATTCTCTGGGAGAGGGAGAGCTACGCACTGCTGCTGAGGTGAAGCGTCGTTACCTGGACTGGCGTGCACTGATGAAGAGAAAACAGCTTCGGgctgagctctctctctcctcctcctcatcctcatctgtggccctgaagactgagTATGATCAGTCCTCCCCTGAGCATGAGACAGCTTCTCTGGGATCTGGGTGTGACCAGCTGCTTGACCTCTCAGGCCTCTCAAAGGATTGTCACTGCGACTGGCCAGAGCTGGCGGCTCTCGGTGAGCCGAGCGGGCAGGCCATGATGGCACCGCTGGGTGTGAAGATGGAGGATGATGTCAGTGAATACAGACTGGATGGTGATGGTGATATGGGACACAGAGAAATGGATGAAGATGATATTCCCTCCCTCCTCAGTGACATTGTGTCACGTGGTGAGGGGCATGTTGGTGATGTTTACTCCCACAACGACTTGGGCATGCTCACGTCCTCCAAGGCTCCGACGTCTACCACCAACCGAGACTTGCCACTCGCTGGTGGCCTGATGGGGATGCCAGCCCAAGCTCTGGGTGGACTAAATAATCATGAAAATGTGGGGGCAGGTTTTCGTGTTGCTGTTGAGAAACAGCGACTGGAGCTGGAAAAACAGCGCCTGGCTGTGGAAACTGAACGTCTGGCAGTGGAGAAAGAGCGGCTGGTGGTGGAGAAGGAGCGACTTCGTCAGATGGAGGTAGAGAGGGAACGGCTgcagctagagagagagaggttacaGGTGGAGAGGGAGAGGCTGAGACTTCTGCTccttagccaatcagagcgtgTGGACTCCTCATTTGACCTGCCGCCGCAACAAGGCCCTCCTTCGTCCTCCACATCTTCTTTATCCTCCACTCATGatggacagagggagagagagaaagaaagtaaaGGCTGGATGCCAATGGTGGATCTGGAGACAGAAAGGCTAAAACTAGAGAAGGAGAGACTGCAGCTGGAGAAAGAGAGGCTGCAGTTCTTCAAATTTGAGGCAGGCAGACTGCAGATTGAGAGAGAACGCCTCCaagtggagaaagagagaatgcAGCTGCATCAGGGCCACTGGGAAAAGGACTGATAAGAGATAGAGGAAAAGatgcacacacatttttcaccagCATCAGGGGAGCTTTAATACTGAAAACAACCCAGAATGTGTGGATTTGCATCAGCCGCTGCTACAGCTTTCAAGTTCCACACACGTATCCTTAAGGAAGATGTTTGGCACTGGAATTTGGTCAAGGACAAGACTGAGATGGAGGTCGGACATATTTATGACCACCATGATAAAGCAGTGCCTCATGATGTCTTCATAAAATGCGTGACAGGACAGAAAAGGTGCCGTCATGATAACATCTAGCATTTGTTTGGCATACGCAGCTGGTTGGCCCTGAACATATTTGATACATAAAATGTTCAGTACCTCATCCAAATATACAATGCACAAAATGTGCAGTTTAAAACATCAGATGCTGGGATATCAATAGAACACATGCGTACTAGACATGTTTTATAATGGTGTAGATGAAAGAATGGAACTGGGATGTCTTACTCTGCATTTATGCACCAAACCAGTGCCAACTTATCTACTGCATGGGTGCTTGTCTGTAAAAGATAGCTTCCAACATTAAATAGAAAGCAAACAATTGTTACTTGTACAGAGAGTTTTTTATGCTATTTATGTTTTACTGTCAAGTGCTTGTGTTAAAATATCTACATGATATGTAATATTTACATGCTAATGCTTATAACTTTGTATAGTTGTCCAACTATTTTAAACTGATATTTGctatttttcacagcagatattttaatttgtcatagcatgaaaagcacaggtgttactaatccCAAAAAcaatggctctgttctatttacatgtcccagtaagccatgacagtgtgactgtgagccagcatgcacaataccaggattCTGAAACTGAAgtagctaaatggaattcagtcAATCAttaatttgaatatttatacctgtgtgtttcctgctgtgacatgtcaaaatgttccATGAAATAAGGCGTACTAAGATTTTATGTTTTCTCCATTAAGATTTGTGGACTTGGAAAAGAGCTTGAACATCTGTGACGAGCAGCTACTGGAAGTTGGGGTGTGCATGCTAGAAGATGAAAGTGAAATATTCCATTAATGGCTTTTTGCTTTAGTTCTGTTGAGCTATGAATATACTGTagtatgttatattatatagtgTTACTGGCTGCTAAAAACTGTGACTGTATACTGTCATCCAACACATCAAACACAATATACAATGCCTTTTGATTATGTTGTAAACAATCACctcttttttaatgtttgtccTGAGTTACAACTAATTTATCAATTTGCCCAGCAGCCCTATATTATTATTTCCTTACATTATAATTATATCTGTGATATGCATATATTTGTATGctatttaacagttttttttatgatttcttaCTCAGTCCGCACTTCCCtgttgatacatttttaaaataaagttagttgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27147 lncRNA downstream 185876 27510793 ~ 27539558 (-) True G19916
TU27145 lncRNA downstream 238957 27486185 ~ 27486477 (-) True G19915
TU27143 lncRNA downstream 318888 27405393 ~ 27406546 (-) True G19913
TU27081 lncRNA downstream 497945 27227251 ~ 27227489 (-) True G19876
TU27079 lncRNA downstream 507244 27217742 ~ 27218190 (-) True G19874
TU27199 lncRNA upstream 11828 27743215 ~ 27743465 (-) True G19963
TU27205 lncRNA upstream 13898 27745285 ~ 27745574 (-) True G19967
TU27257 lncRNA upstream 38114 27769501 ~ 27771897 (-) True G20012
TU27264 lncRNA upstream 93298 27824685 ~ 27834201 (-) False cwf19l2
TU27271 lncRNA upstream 137207 27868594 ~ 27913558 (-) True G20019
XM_039792203.1 mRNA downstream 245368 27407761 ~ 27480066 (-) False pdgfd
XM_039792196.1 mRNA downstream 245368 27407761 ~ 27480066 (-) True pdgfd
XM_039791741.1 mRNA downstream 468438 27247233 ~ 27256996 (-) True LOC120553392
XM_039785702.1 mRNA downstream 555056 27160443 ~ 27170378 (-) True fzd4
XM_039791205.1 mRNA downstream 752868 26966344 ~ 26972566 (-) True tyr
XM_039781709.1 mRNA upstream 40581 27771968 ~ 27820113 (-) True gucy1a2
XM_039787706.1 mRNA upstream 93218 27824605 ~ 27847548 (-) False cwf19l2
XM_039787697.1 mRNA upstream 93218 27824605 ~ 27847548 (-) True cwf19l2
XM_039822007.1 mRNA upstream 118637 27850024 ~ 27864523 (-) True alkbh8
XM_039822022.1 mRNA upstream 141028 27872415 ~ 27880814 (-) True kbtbd3
TU27044 other downstream 636370 27088606 ~ 27089064 (-) True G19840
XR_005641066.1 other downstream 1279499 26434281 ~ 26445935 (-) False LOC120570434
XR_005641048.1 other downstream 1390715 26320940 ~ 26334719 (-) False LOC120570356
unassigned_transcript_98 other upstream 334938 28066325 ~ 28066397 (-) True trnam-cau_1
unassigned_transcript_100 other upstream 419193 28150580 ~ 28150652 (-) True trnar-acg
TU27758 other upstream 1715783 29447170 ~ 29448655 (-) True G20417
unassigned_transcript_101 other upstream 1781262 29512649 ~ 29512720 (-) True trnaw-cca
TU27977 other upstream 2236406 29967793 ~ 29972330 (-) False im:7138535

Expression Profile