RNA id: XM_039786507.1



Basic Information


Item Value
RNA id XM_039786507.1
length 927
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC120549514
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5863359 ~ 5864285 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGATCATGATAAACTCTACACAGGTTTCATATTTCACTTTTGGTGCATACTTTGATATTGGGATCTTTAAATACTTATTTTTTCTGATCATTATGTGTTTTTATGCTTTAATAGTGTGTGCCAATCTTTTGCTGATTGTGGTTATCTGTATGAACAGAAGCTTACATGAACCTATGTACCTTTTTCTGTGCAGCCTGTTTGTAAATGAACTGTATGGTAGTACAGGGTTGTTTCCATTCCTTCTGGTTCAGATCCTCTCTAACATTCACACTGTTTGTGCTCAattctgtttcctgcagattttctgtgtgtatacttatgcaagtatacaattttttaatttatccATCATATCTTATGACAGATATCTTGCCATCTGTTATCCTCTGCAATATAACACACGTATGACATTTAACAAGGTTACTGTGCTTATTGCTCTAACATGGTCATTACCATTTGTTGGAGATGCTGTCGTGATATCTTTAAGTGCTCctttacagctgtgtgggaACATCATTAACAAAGTTTACTGTAACAACTACTCTGTTGTGAAACTGGCCTGCTCTGACACCAGAGTCAATAACATTTATGGACTAATTTGCACTTGTCTTTTAGTCTTTGGTCCTCTCATTTTAATCCTTTACACATACATGAAGATCCTTAAAGTGTGTTATTCTGGTTCTAAACAGACCAGACAGAAAGCTTTCAGTACCTGCACACCTCACCTCGCTTCTCTGATTAACTTTTCTTTTGGGGGTTTCTTTGAAATAGTACAGAGCAGATATGATATGAGCAGTGTACCCATGATGTTGcgcatttttttgtcattatacTTCCTGACGTGCCAACCGATCTTTAACCCTTTAATGTATGGTCTGCAAATGTCAAAAATACGTAGCTTGTGTAAAAGTCTTATCTTTGGATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19811 lncRNA downstream 141584 5721239 ~ 5721775 (-) True G14762
TU19798 lncRNA downstream 182585 5674449 ~ 5680774 (-) True LOC120549106
XR_005637329.1 lncRNA downstream 182593 5675410 ~ 5680766 (-) False LOC120549106
TU19791 lncRNA downstream 189086 5633508 ~ 5674273 (-) True G14746
TU19874 lncRNA upstream 162585 6026870 ~ 6030460 (-) True G14816
TU19880 lncRNA upstream 172915 6037200 ~ 6038733 (-) True G14820
TU19881 lncRNA upstream 218208 6082493 ~ 6167461 (-) True G14821
TU19882 lncRNA upstream 218208 6082493 ~ 6164644 (-) False G14821
TU19894 lncRNA upstream 357070 6221355 ~ 6222054 (-) True G14832
XM_039778954.1 mRNA downstream 4419 5858011 ~ 5858940 (-) True LOC120545023
XM_039778944.1 mRNA downstream 16442 5842654 ~ 5846917 (-) True LOC120545016
XM_039790936.1 mRNA downstream 21730 5840709 ~ 5841629 (-) True LOC120552709
XM_039821816.1 mRNA downstream 31250 5831177 ~ 5832109 (-) True LOC120572476
XM_039778924.1 mRNA downstream 70412 5792018 ~ 5792947 (-) True LOC120545000
XM_039786470.1 mRNA upstream 9513 5873798 ~ 5874950 (-) True LOC120549493
XM_039786496.1 mRNA upstream 24766 5889051 ~ 5889977 (-) True LOC120549505
XM_039778977.1 mRNA upstream 53769 5918054 ~ 5919010 (-) True LOC120545036
XM_039778991.1 mRNA upstream 75387 5939672 ~ 5948863 (-) True LOC120545043
XM_039779057.1 mRNA upstream 98635 5962920 ~ 5963870 (-) True LOC120545063
TU19803 other downstream 157382 5703387 ~ 5705977 (-) True G14754
TU19757 other downstream 329532 5510716 ~ 5533827 (-) False G14722
TU19742 other downstream 359929 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 557990 5214769 ~ 5305369 (-) True G14553
TU19570 other downstream 751380 5062988 ~ 5111979 (-) True G14579
TU19916 other upstream 438064 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1156698 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 1156698 7020983 ~ 7032467 (-) False atg16l2
XR_005638460.1 other upstream 1177797 7042082 ~ 7042373 (-) True LOC120554469
TU20319 other upstream 1238081 7102366 ~ 7104090 (-) True G15110

Expression Profile