RNA id: XM_039786667.1


Basic Information

Item Value
RNA id XM_039786667.1
length 2346
RNA type mRNA
GC content 0.48
exon number 4
gene id pid1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 25950551 ~ 25982215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATATTCTTCATTACCGACCAGTCCAGATTGAAGGAGGACAGAGAGGCAAGCCGTGAAAGCGAGCAGATGTGAACCGGACTACGAAAAGAGAACAAGCTGCAGCGAAAAACGGAAAACCTTTGATACTGCTAATATGTGGCAACCCGCTTCGGAGCGATTGCAGCACTTTCAGACCATGCTGAAGACCAAGCTAAATGTGCTGACGCTGAGGAAGGAGCCCTTGCCCACGGTGATCTTTCACGAGCCTGAGGCCATCGAGCTCTGTTCCACCACACCGCTCACAAAGAGCAGGACTCATGCTGGGTACAAGGTGGCCTACCTGGGTAAGGTGACTATCTCAGGGACCCAGTTCCTGTCTGGCTGCACAGAGTCGGCGGTGGTGGGTCTTGTGGAGCGTCGTGGCCTTGCTCAGCAGCAGGGCAGCTGCCCCGAAGGCAACTCTCTGCTGGAGATCCGGCCCTTCCAGGTGCGTCTTCACCACCTGGATGAGCACGGCGAGGCCTCAGTAACCATGGACACCTACCAGGTGGCGCGGATCGCCTACTGCACAGCCGACCACAGCGTCAGACCCAACGTTTTCGCCTGGATCTACCGGGAGATCAACGATGACCTGACCTTCCAGATGGACTGCCATGCTGTGGAGTGCGAGAGCAAGCTGGAGGCCAAGAAATTGGCACACTCGATGATGGAGGCTTTCCGCAAGACTTTCCACAGCATGCGCAGCGATGGGCGCATCCACAAGAGTGGCTCATCGGACGACTTTGCTGAGGACTCATCCAGCCCTGAAGACTCGACCCCAGACGACGGTTGAACTAAAACTCCCCTAAACTCCTGATCTCCATCCTAACTAAGCGAGGGGGTGACCGGAAGGATGGACAGATTACctgctctctctcattctcccaCCTACTATCTCATTCTGTTATCAATTTGGAACAAAATTAAGTGAACCTGTGAACCAACACACCCAGGATAATGAAGTAGCTTTTTAATACTGTAAATGGAAGGTAGATGAAAAAAGGAGTTACAAAAGACCTACATTTACATACAGGGATAGCAAAGTGCTGCCACATTAAATAACTGGTCCTCAAAGACACACAGGGGTCTTTTATGGACCTCTGTAAACGCCCTCAAGAGATTGACTCAACATTGCCATCTTCATTTTCAACCACTGTCGCTCCTGCACTCAGCGGAGACTCTGTTTGTGGTTCTTAAGctttttcacccaggaaacgacAACATTTAGTCCCTGTTCTTCTGACCCCAGCTCATGACAACCTATTGCTACTCTTGCCATGTAGGGACCCAGCAGAATAGGCCTGTGACCTATTTTGGGTCCCAACCCAGAGTTTATGAGACTGTTGGAGCACATAAAGTctttaaatgtttaattatGTGGATCGATCTCTGTTACAATGCCTTTTGGCCTTGCTATTTGCGAATGAGGATGTGAAAGAAAAGCTAAGCCTTTAAGCACTATTCATATTATCACTATGGTACCTTAGTCCAACCCCGAAATTATTCGCCGGCACGGCTGTCAAGTGAACGACGGAGCCGGAGCTTCTACCGCCATCTCCGTATAATAGGTACTTAAAGATTCAGAGTATGCATACGGTACCTGGGAGAATATAGGTGCTACATAGAGGTTTCATTTTAGAAGTTCTCACTGGGCTGGAAGCCTGGGCCTGTCTGCGACACCTTAATCATCTACTTCTGTTTTGAGTATATCAAAATCCAGGCTGGATTTTGATTGTCAGATTATGTGCTCAGATTATGTGCCTCACTTTCCTCTCACATTAGTTTGGTCTCCTACCCAGGTccctatgtgtgtatgtgtggccgtgtgtgtgtgccaacctttttgttttagtttttctgtgtgtgtaggtgtaatTGCTTACTTCTGTACTTTGTGTACATGAATGTACACGTGAGTgcttgcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtataagCATGCTGAGGGGTGTGTATGGACAGgccggaggggggggggagaatgtTTATAAAGCTGTAGATTACTGTGTCATGTCTGTCTGAAAGCTCAGACGTGCtttaaatgtttgaaaaatGTTACCTTAAGTGTTTTCTATACAGTGTTTGCAAAGCTCAAGAAACAATTGCATATAAAGTATTTACCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26546 lncRNA downstream 219436 25721493 ~ 25731115 (-) True G19466
TU26503 lncRNA downstream 283322 25622986 ~ 25667229 (-) True G19438
TU26464 lncRNA downstream 484045 25430426 ~ 25466506 (-) True G19412
TU26447 lncRNA downstream 537029 25413195 ~ 25413522 (-) True G19401
TU26445 lncRNA downstream 594819 25355522 ~ 25355732 (-) True G19399
TU26638 lncRNA upstream 96709 26078924 ~ 26089702 (-) False trip12
TU26656 lncRNA upstream 142022 26124237 ~ 26128420 (-) True G19551
TU26673 lncRNA upstream 186459 26168674 ~ 26170568 (-) True G19566
TU26800 lncRNA upstream 314284 26296499 ~ 26300091 (-) True G19663
TU26797 lncRNA upstream 325522 26307737 ~ 26310671 (-) True G19660
XM_039781734.1 mRNA downstream 60999 25756303 ~ 25889552 (-) False LOC120546637
XM_039781743.1 mRNA downstream 60999 25756303 ~ 25889552 (-) False LOC120546637
XM_039781770.1 mRNA downstream 136076 25756303 ~ 25814475 (-) False LOC120546637
XM_039781724.1 mRNA downstream 160452 25756303 ~ 25790099 (-) True LOC120546637
XM_039781752.1 mRNA downstream 160453 25756303 ~ 25790098 (-) False LOC120546637
XM_039790621.1 mRNA upstream 4379 25986594 ~ 26038558 (-) True dner
XM_039783956.1 mRNA upstream 59080 26041295 ~ 26068587 (-) True trip12
XM_039783913.1 mRNA upstream 59399 26041614 ~ 26087874 (-) False trip12
XM_039783999.1 mRNA upstream 59399 26041614 ~ 26071863 (-) False trip12
XM_039783991.1 mRNA upstream 59399 26041614 ~ 26071863 (-) False trip12
TU26301 other downstream 1697638 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 2122597 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 2191725 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 2698131 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 2802036 23139400 ~ 23148515 (-) False G18885
XR_005641049.1 other upstream 324849 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 338725 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 338727 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 338727 26320942 ~ 26334687 (-) False LOC120570356
XR_005641066.1 other upstream 452066 26434281 ~ 26445935 (-) False LOC120570434

Expression Profile