RNA id: XM_039786745.1


Basic Information

Item Value
RNA id XM_039786745.1
length 1532
RNA type mRNA
GC content 0.51
exon number 7
gene id clns1a
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12395939 ~ 12411272 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACATTTTTTGACGTTGCTTCGACACATCTTGCCGCGATATTTCAGCTTTGAAAGGTCGACACAACTGTGAGGAGTTAACATCGCTTGTGTTATTATCAGACTTCACGCCGCCCGTGTCGATTCTCTGAACGGCTCGGCCTGGTTGTGCTATCCCCGGAGAGGACGCGCACGGTCCGGCTCGAAGTTTATCGGCCTCCAGCTGTCGAGCGTTCATTTTCAGAGAAGTTATCCCGGGTTAAATTAGCAAGCTTTTGTGGCACGAAATAGGTCACACGGCTTCTCGTTGACAGCAGAGTCTGGTTTCTCTTCCGACGCATCATTCAGCGAGACTGCAGACGTCAACGGTTGCACGCACGATGGTTTTATTAAAAAACCTCCGTCCTCCCACCGAGGGAGTGAAGCACGAGCAAGCCGAGACCACGGCGGTGATGAACGGCCAGAAGCTGGGCTGCGGCACGCTGTACGTCGCCGAAACGCGGCTGTTGTGGTTTGACGGCTCAGGGATGGGCTTCTCTCTGGAGTATCCCACCATCGGCCTGCACGCCATCTCTAGAGACGTCAGCGCTTACCCGCAGGAACACCTGTACGTCATGGTCAACGGCAAACTCACGGGTGAGAATGAGGCAGATATGGCAGAGAAAGCAGCGGATGACGAGGAAGACGacagcagtaacagcagctgtggtgatgatgatgatgatgatgaagaagcGATCACTGAGATTCGATTTGTGCCCAGCGACAAGGTGGCATTGGAGTCCATGTTCTCAGCGATGTGTGAGTGCCAGGCGCTGCACCCCGACCCAGAGGACGACGACTCAGACAACGACTTCGAAGGAGAAGAGTACGACGTGGAGGAGGCCGAGCACGGCCATGCTGACATCCCGTCCTTCTACACCTGTGATGAGGGTCTGTCGGCGCTCACACAGGAGGGCCAGGCCACGCTGGAGAGGCTGGAGGGGATGTTAGCCCATTCAGTCGCTCAGCAGTACCACATGGCCGGGGTCCGAACCGAAGAAGCCAACGCCGAATTTGAAGACGGTATGGAGGTGGATGCATCAGCGATGGAGGCCGGTCAGTTTGAGGACGCAGACGTTGAGCACTGAGGGAAGTCATCCCAGCGGCCAATCAAAGCACCAGTGTTGCATCATGGGATTGGAGGAGAGGACAGCAGCACTTCTCTAAGGCTCTCAGCTCTTACTTGTAATCATCTCTAGTCTTTTTGAAGCTTCTTacattttctcttgtgttcaaTTGGAGCTCAcatgttgtattgtgttattgGCGTTCTGCTCACCTTCATCTTTACTAATTTCTCCAAGTCATATAAGTCAAGTGTGCTGCATACAGCCACGTCAGCTAATGTAGACTATTGAGGTGCAGCCACAAATATCCAGATCATGTTGActgtagaagaaaaaaagctgagtttgttttgTACCTAACAACCAATTTAATATCTGATTCTCTGCAAAGGAGAGTTAATGTCTTTGTATGAAATTGTCAATAAATGCATAGTTTTTGTAAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22518 lncRNA downstream 1102 12394490 ~ 12394837 (-) True G16525
TU22424 lncRNA downstream 122102 12235506 ~ 12273837 (-) False G16457
TU22393 lncRNA downstream 123186 12229958 ~ 12272753 (-) True G16436
TU22379 lncRNA downstream 130212 12263662 ~ 12265727 (-) False G16435
TU22398 lncRNA downstream 135615 12222801 ~ 12260324 (-) False G16437
TU22524 lncRNA upstream 2212 12413484 ~ 12415913 (-) True G16528
TU22527 lncRNA upstream 32357 12443629 ~ 12444009 (-) True G16531
TU22555 lncRNA upstream 164961 12576233 ~ 12576583 (-) True G16554
TU22712 lncRNA upstream 218300 12629572 ~ 12629915 (-) False LOC120544465
TU22720 lncRNA upstream 252927 12664199 ~ 12678548 (-) False slc8a2b
XM_039782925.1 mRNA downstream 9899 12288657 ~ 12386040 (-) False myo7aa
XM_039782926.1 mRNA downstream 9931 12288657 ~ 12386008 (-) False myo7aa
XM_039782924.1 mRNA downstream 22779 12288657 ~ 12373160 (-) False myo7aa
XM_039782923.1 mRNA downstream 22779 12288657 ~ 12373160 (-) True myo7aa
XM_039787161.1 mRNA downstream 196275 12198103 ~ 12199664 (-) False LOC120550388
XM_039785813.1 mRNA upstream 7833 12419105 ~ 12438539 (-) False rsf1a
XM_039785804.1 mRNA upstream 7833 12419105 ~ 12438539 (-) True rsf1a
XM_039788555.1 mRNA upstream 135546 12546818 ~ 12567602 (-) True LOC120551266
XM_039790723.1 mRNA upstream 162405 12573677 ~ 12583611 (-) True med17
XM_039790715.1 mRNA upstream 162597 12573869 ~ 12585498 (-) False med17
TU22426 other downstream 133164 12225059 ~ 12262775 (-) False G16458
TU22359 other downstream 362177 11989018 ~ 12033762 (-) True G16422
TU22339 other downstream 440361 11949337 ~ 11955578 (-) True G16407
TU21879 other downstream 1971169 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 2065092 10326253 ~ 10330847 (-) False LOC120574316
XR_005638366.1 other upstream 75745 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 77601 12488873 ~ 12489063 (-) True LOC120554526
XR_005638489.1 other upstream 78578 12489850 ~ 12490013 (-) True LOC120554512
XR_005638506.1 other upstream 88711 12499983 ~ 12500146 (-) True LOC120554552
XR_005638495.1 other upstream 91898 12503170 ~ 12503360 (-) True LOC120554527

Expression Profile