RNA id: XM_039786999.1



Basic Information


Item Value
RNA id XM_039786999.1
length 661
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120549823
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15695804 ~ 15698453 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGAGAGCTATAAAAGTTAGTGAGTAAGAGTCCTTCCAACAGAACGAGGACCAGgagctactactactactactactactactactacAGATAACTGTTCAGGTTCAGTCTGGTGTTCAGCAGTCAGAATGATGACTCCCGCTCTCCTCTCTGTGGCCTTGCTGCTGTTGCTTCTTCCTGGGGTTCCATCTGCAGATCCCACTCTATATCCCATCAGTGTCCTGGTGAAAAACTCTGTAAaccaaagtcccaataagaccTACAGCACTTCTGTGGTTTACAGAGGAATCTTGCTGGGTGGACTGACGAGACTGCAGAAGTCAAACAAAGGCTTTAGGTTCACCTACACACAGGATCCAAACTATGGCCCGTTCCTACAGAGTGTGAACGGTTTGGCTGGAAGTCAACAAAAACGCACCTACTGGGAGCTGCTGGTCAAGCCTGCAAACAACGTGACATTCCGTCCTGATGTCGGTATTGGATGTTACATCCCAAATCCGAATGACTTAATCATCCTGAACTATGCCAAGTACTAAAGGATGAGCAGCCGCTGGAAATCTCCATGGGATCAAAGCCAGATTCAACTGTATGATTATGTATTTCACATATTATGATTCAACAAAAATGAATTTGTGTTTCTTATTTAGCGAGAAAGCAAGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23562 lncRNA downstream 44804 15646740 ~ 15651000 (-) False lyrm9
TU23563 lncRNA downstream 44804 15646740 ~ 15651000 (-) False lyrm9
TU23557 lncRNA downstream 52814 15642003 ~ 15642990 (-) True G17264
TU23545 lncRNA downstream 160577 15533876 ~ 15535227 (-) True G17253
TU23515 lncRNA downstream 254294 15434214 ~ 15441510 (-) True G17225
TU23597 lncRNA upstream 12334 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA upstream 14682 15713132 ~ 15714089 (-) True LOC120549843
TU23748 lncRNA upstream 318472 16016922 ~ 16048016 (-) True G17389
TU23849 lncRNA upstream 702173 16400623 ~ 16400836 (-) True G17466
TU23886 lncRNA upstream 718845 16417295 ~ 16418742 (-) True G17499
XM_039818972.1 mRNA downstream 13012 15651473 ~ 15682792 (-) True LOC120570576
XM_039818446.1 mRNA downstream 44757 15646641 ~ 15651047 (-) False lyrm9
XM_039818454.1 mRNA downstream 44757 15646641 ~ 15651047 (-) True lyrm9
XM_039777815.1 mRNA downstream 57848 15626090 ~ 15637956 (-) True tnfaip1
XM_039777798.1 mRNA downstream 117354 15538653 ~ 15578450 (-) False sgsm2
XM_039786956.1 mRNA upstream 4529 15702979 ~ 15706276 (-) True LOC120549813
XM_039786967.1 mRNA upstream 4529 15702979 ~ 15706269 (-) False LOC120549813
XM_039786977.1 mRNA upstream 4529 15702979 ~ 15706201 (-) False LOC120549813
XM_039792535.1 mRNA upstream 25707 15724157 ~ 15726157 (-) False LOC120553928
XM_039792538.1 mRNA upstream 25707 15724157 ~ 15726114 (-) False LOC120553928
XR_005641363.1 other downstream 370006 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23133 other downstream 1609040 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 1872747 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 1941188 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23589 other upstream 4159 15702609 ~ 15714263 (-) True G17287
XR_005637173.1 other upstream 347558 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other upstream 351422 16049872 ~ 16060408 (-) False sdhdb
TU24093 other upstream 1149711 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 1775286 17473736 ~ 17478844 (-) False xaf1

Expression Profile