RNA id: XM_039787137.1


Basic Information

Item Value
RNA id XM_039787137.1
length 1190
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC120550095
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11580446 ~ 11587261 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAGTGTAACACAGGAAATGAAGACTGAAGTCTTCTAGAAAGtcagcagcagcaccagcagcagagagacGCACAGAGCTTGCTGAAGCGCTGACACCTCCGACATGACGGGCAGAAAAAACCTGATGAGAGTTCTGCTGCTCGCCAGTCTGCTTCTCCCAGGTGTGCGGTGCGTAAAGGACGCAGTGTTTGTGTACAGCAGACTGGGAGGCGTTGCTCTGCTGCCGTGTGTCAACCAGCTTTCCTCAGACTGCTCTGGGATCAGCTGGACCTTCTACAAGGGCGGCCGCTACACCGAGGAGGTCAGCGGGGGGCAGGTGAGCGCGGGCTCGGACAAGGCCAGCCGCATGTCCATCGAACCCAACTGCTCGATCAGCCTCCGCGGCCTCATCGTGGAAGACGCCGGCTCCTACCACTGCCTGCAGCACGGAAAAAACATCGCTGACGTTTACCTGTCTCTCCTCACCATCACCTCCGTCTCCACCTTCACCGACCTGCAGCCTGGAGGAAACCTCACCCTGAGCTGCATCCTCTTCACCTACTATGACGTTGGGAGCTGCAAGTCATACTCCAGCGGGTTCAACCTCAGCTGGGTGGCTGAGGACGGTACCACGCTGCCCAAAGACACCAGGTCCGAGCAGATTATCCTCACTCGCTGCAACATCACGCTGGTCATTAAACTCCGGAGGGAcgacaacaacaggaagtggAGGTGTCAGGTGAACACCGGAGAAAACCGCGCGGCTGAGTTTCTGTACTTCACTTCCACCTTTTTGTTCCAAGATCCTCCCACCGCCCAGAATCTGATTCCTTCTTCACCCACCATAGACTGTCCCGTCGAGCTGCCCATCAGCCGCATCGTGCTCTGTGTGGCTCTGCCCGTCATGGTGCTCATAGTGGGATTCTTCACCTGGAGAGGAGACCGCAAGAGGGCAAAAACGTATGCAGCTTGCATCGAGCTGCAGGAAATTAACTGATTTGTTGATCACTTTGTCTGTTGCtgggtttttttcttcatatttttgtcttttttgtatcTAAATATAAGCAACTCTATTCAAAAGTGACTTTTTTATGTTGTTAGGGATTTCCTCCTCTCAATGTGCCTGACTCCAAATAAAAGACCTATATACCCCCGCGCATTCGTTAAATTGGAATTACATAGATCCTAAGCAAGAGCCAAATAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21972 lncRNA upstream 45145 11535088 ~ 11535301 (+) True G16207
XR_005641426.1 lncRNA upstream 94376 11484612 ~ 11486070 (+) True LOC120572352
TU21959 lncRNA upstream 138187 11427476 ~ 11442259 (+) True LOC120552116
XR_005637959.1 lncRNA upstream 138362 11427476 ~ 11442084 (+) False LOC120552116
TU21957 lncRNA upstream 161565 11418614 ~ 11418881 (+) True G16192
TU22073 lncRNA downstream 101959 11689220 ~ 11771683 (+) True G16229
TU22079 lncRNA downstream 147137 11734398 ~ 11752981 (+) True G16235
TU22082 lncRNA downstream 167113 11754374 ~ 11812385 (+) True G16237
TU22096 lncRNA downstream 231619 11818880 ~ 11819272 (+) True G16250
TU22098 lncRNA downstream 231619 11818880 ~ 11819272 (+) False G16250
XM_039821761.1 mRNA upstream 7220 11565261 ~ 11573226 (+) True kctd14
XM_039786653.1 mRNA upstream 17518 11554652 ~ 11562928 (+) True rps3
XM_039791660.1 mRNA upstream 39627 11535785 ~ 11540819 (+) True LOC120553334
XM_039788488.1 mRNA upstream 601017 10977205 ~ 10979429 (+) True LOC120551226
XM_039788464.1 mRNA upstream 1116093 10455757 ~ 10464353 (+) True LOC120551211
XM_039787165.1 mRNA downstream 5167 11592428 ~ 11613222 (+) True LOC120550461
XM_039787163.1 mRNA downstream 242551 11829812 ~ 11833364 (+) True ompa
XM_039788519.1 mRNA downstream 284667 11871928 ~ 11883024 (+) True LOC120551249
XM_039787152.1 mRNA downstream 370635 11957896 ~ 11973180 (+) True LOC120550284
XM_039787153.1 mRNA downstream 423415 12010676 ~ 12031804 (+) True LOC120550300
XR_005638430.1 other upstream 18042 11562256 ~ 11562404 (+) True LOC120554420
XR_005638440.1 other upstream 19907 11560391 ~ 11560539 (+) True LOC120554427
XR_005638451.1 other upstream 22846 11557452 ~ 11557600 (+) True LOC120554442
XR_005638446.1 other upstream 23991 11556307 ~ 11556455 (+) True LOC120554434
TU21270 other upstream 1576851 10002250 ~ 10003595 (+) True G15712
TU22150 other downstream 307243 11894504 ~ 11900873 (+) True G16267
TU22453 other downstream 808734 12395995 ~ 12409274 (+) True G16467
TU22469 other downstream 864244 12451505 ~ 12456399 (+) False LOC120552034
XR_005638517.1 other downstream 1035536 12622797 ~ 12622987 (+) True LOC120554572
XR_005638490.1 other downstream 1043413 12630674 ~ 12630864 (+) True LOC120554522

Expression Profile