RNA id: XM_039787146.1


Basic Information

Item Value
RNA id XM_039787146.1
length 2066
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC120550222
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12106269 ~ 12114449 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaatgtgtattctcTCTTGAACAGGTCACTGTGACTCCAGCCCCCTCCTTAGATTACACCCTCACCCCCCTCTCTGGTGACCAGTACACATCCTGTCTGTGTGGCAGTGAGCGCAAGACCCTCAGCTGGACCATGGCCCCCTCAGCCTTAGGAGTTGTAAATGTGTCGGTGAGTGCTGAGGCCGTGACATCCCAAATCTCATGTGACAATGAGGTTGTGAGCGTGCCTGAAAGAGGACGAATTGATGTGGTCACACGACCTCTCATAGTAAAGGCTGAGGGAACTGAGGTGACCAACACCTACAACTGGCTGCTCTGCCCAAAAGGGCAAGCTTTGACGGAGGAAGTGGACATAGAACTCCCTGAGAACATTGCTGGATCTGCCCGTGCTTCAGTATCAGTACTCGGTGACATCCTGGGCCGGGCTCTGGAGAACCTGGATGGGCTGCTGCAGATGCCGTATGGATGTGGCGAGCAGAACATGGCGCTCCTTGCCCCAGACATCTACATCCTGGAGTACCTGAGAGACACCCAGCAGCTGACCCCAGCCATCAGGAACAAGGCTACCAACTTCCTGACCAGTGGCTACCAGAGACAGCTGAACTACAAAGATAACGACGGCGCTTACAGCACATTTGGAGCAGGACCAGGGAACACTTGGCTGACTGCATTTGTGTTGCGATCGTTTGCCAAAGCACAGACTTTCATCTACATTGACCCAGCCAACATCGAAGCGTCCGTGACTTGGCTGAaaagtaaacaacaacaaaatggcTGTTTTGAACAGTCGGGGAAGCTCTTCCACACCATAATGAAGGGGAGGGTGTCTGATGAAGTTACTCTCAGTGCCTACATCACTGCTGCCTTCTTGGAGATGAACATGTACATAGATGATCCTGCGGTTCATGGGCCGGTGAAGGCTAGCTTGTCTTGCCTCAAGGAGTCCATCAGTGACCTCAGCAACACCTACGCCACAGCTCTGCTGGCGTACGTCTTCACCCTGGCAGGAGACATGGAGACCCGTGCTCACCTACTGGGTCACCTAGACGCTGTTGCGTTACGAGAAGGAGGTTTCCTCCACTGGTCTCAGACAGCAACAGAAACgtcagcctctctgtctgtggAGACCAGCTCCTATGTGCTGCTGGCTAAACTCAGTGCCTCCCCGACTGCTGAAGACCTGGGCTACGCCAGCCGCATCGTTAGATGGCTGACGAGCCAGCAGAACTATTACGGAGGATTCTCCTCCACACAGGACACCGTGGTGGCTCTTCAGGCTCTGGCTCTCTACTCCACTCTGGTGTTCAGTCCAGAGGGTTCAAGCACCGTGACGGTCCGGTCTCCCAGGGGCCAGCTGGTGTTTCGCGTGAATCGGAACAACAAACTGCTCTACCAGGAGAAGCAGCTGCAGGACGTGACGGGAAAGTACAGCCTGGAGGTGAAGGGCACTGCATGTGCTGCCATACAGATTTCCCTTGTTTATAACATCCCAACTCCTGCTGCTGATACCACCCTCAGTGTTCTGGTCGAACCAGAGGCCGACTGCACCAGCAAAATACCCAAACTCAGTCTGGAGCTAACATCCCTATATAGTGGAAAGGAGTCCAGTACAAACATGGTTATCCTGGATATCAAAATGCTCTCCGGATTTGTCCCAGACCCAGAGTCTTTGAACATGCTCAAAGGTGCCCTGCTGGTGGATCGTGTTGAACAAAAGGAGGATCATGTTCTGGTGTACATACGGGAGTTACAGAAGGACAGAAGAATCAACCACAGCCTGACGCTCGTACAGGAGTACCAAGTGCAGAACCTGAAGCCAGCCGTGGTCAAGATCTACGACTACTACCAGCCAAGTGACCAGTCTGATACAGCATACATCGACCCTTGTGTTACAGCTTGAAGAGCATGTGGTCAATCATCTCGTCATCCAGAAGATGCACATTATGTACTAACACCATGTCTGTTTTGTATTTCCTTGTTAGTATTCTGCCACAACCCCTTACAGCTGTGTAACTGTCTGAAGTGAAATGCATAATggataattaaataaaaaaatgtgacaTCAA

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637750.1 lncRNA downstream 38866 12040024 ~ 12067403 (-) True LOC120550567
TU22334 lncRNA downstream 253139 11844936 ~ 11853130 (-) True G16402
TU22298 lncRNA downstream 293893 11809923 ~ 11812376 (-) True G16383
TU22295 lncRNA downstream 386027 11710848 ~ 11720242 (-) True G16380
TU22291 lncRNA downstream 410289 11694266 ~ 11695980 (-) True G16377
TU22385 lncRNA upstream 617 12115066 ~ 12227675 (-) False G16435
TU22416 lncRNA upstream 30601 12145050 ~ 12156278 (-) True G16451
XR_005637747.1 lncRNA upstream 37925 12152374 ~ 12153862 (-) True LOC120550557
TU22417 lncRNA upstream 37926 12152375 ~ 12153736 (-) False LOC120550557
TU22419 lncRNA upstream 41039 12155488 ~ 12219915 (-) True G16454
XM_039787143.1 mRNA downstream 7082 12078206 ~ 12099187 (-) True ints4
XM_039787154.1 mRNA downstream 99838 11986415 ~ 12006431 (-) True LOC120550316
XM_039787159.1 mRNA downstream 199980 11887489 ~ 11906289 (-) False dcun1d5
XM_039787155.1 mRNA downstream 199980 11887489 ~ 11906289 (-) False dcun1d5
XM_039787156.1 mRNA downstream 200157 11887489 ~ 11906112 (-) True dcun1d5
XM_039787161.1 mRNA upstream 83654 12198103 ~ 12199664 (-) False LOC120550388
XM_039787160.1 mRNA upstream 83654 12198103 ~ 12199660 (-) True LOC120550388
XM_039782925.1 mRNA upstream 174208 12288657 ~ 12386040 (-) False myo7aa
XM_039782926.1 mRNA upstream 174208 12288657 ~ 12386008 (-) False myo7aa
XM_039782924.1 mRNA upstream 174208 12288657 ~ 12373160 (-) False myo7aa
TU22359 other downstream 72507 11989018 ~ 12033762 (-) True G16422
TU22339 other downstream 150691 11949337 ~ 11955578 (-) True G16407
TU21879 other downstream 1681499 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 1775422 10326253 ~ 10330847 (-) False LOC120574316
TU21762 other downstream 1956698 10140176 ~ 10149571 (-) True G16064
TU22426 other upstream 110610 12225059 ~ 12262775 (-) False G16458
XR_005638366.1 other upstream 372568 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 374424 12488873 ~ 12489063 (-) True LOC120554526
XR_005638489.1 other upstream 375401 12489850 ~ 12490013 (-) True LOC120554512
XR_005638506.1 other upstream 385534 12499983 ~ 12500146 (-) True LOC120554552

Expression Profile