RNA id: XM_039787154.1


Basic Information

Item Value
RNA id XM_039787154.1
length 2557
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120550316
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11986415 ~ 12006431 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggcatgaaaagaaaagactcaagtaaagtacaattaCCTCAAATGTGTACGTAAGTAcactacttgagtaaatgtacttggttacattccGGGAGCAGCAGCGTGACTTTCTGAGCGCGCAGGCTTTAAGTTTCGTTTCTGCGCGTCTCTCCGGGAGGAGATCCAGTCTGGAGACAGATGCGCGCTGAACGTAGACGGATGAAGTCAACGTGTTTGGTGCTGGGTGTTGATTGCTGTCGTGTTTCTGCACCGCAGTTCCCCAGAGATCCCCTGTCAATCCAACAGTGAGGTTGTTTTCAGTATGCAGAGGAGTGTCCAGCTGGGCCTGCTGCTTCTGGTGGTCCAGTTGTTCCAAGAGGGTCTGGGAAACATCCCAGCAGTCACCCTGGCGGTCCTGGGGTTCAATGTGTATCTTTACATGTTCCCTGCTGCTCCACCGATACAGGCCTGTGTGAGCCTCCAACGTGTGTTCAGGGATAAGGAGTGGCGTCGCCTCTTCCTGTCCCCGCTGCACCACGTGGACGACTGGCACCTCTACTTCAACATGGTGTCCTTCATGTGGAAAGGGATGAGGCTGGAGGGGCGTCTGGGTCCAGCCTGGTTCCTCTACCTGCTGTCAGTCTTCTTCCTGCTCGACGGACTCGTctacctgctgctgcaggcggCGCTGACCAAACTCATTGAGGACTCGAACCCGTTAGTGGCGTTCAGAGACGAGTGTGCTGTCGGCTTCTCGGGTGTCCTGTTTGCTCTGAAGGTGGtcagtaaccatgacaacccaggGGGTGTGACCTACGTGTTGCATATCCGTGTGTCCAATCGCTTCGCTAGCTGGGCGGAGCTAGTGCTGATCTATCTAATTGCTCCCGGGACTTCTTTGGTCGGCCACCTGGCTGGGATCCTGGTGGGTCTGCTCTACACTTGGGGACCACTGAAGACCATCATGAAGAAATGTGCAGAGTTTGTATCTTCAGATTTAAATGCTCCACGGCCAAGTGTATTCTTCAGCTCCTCAGGCTACAGCGGGACTAGACGAGAACACTCAGGAGAGCCACAGCCCGCAGAAGATCATATCGCCGATGATGCATCTGAATATACAGAGTCTTTTATCGCAGGACTGACGGAGGACGAGCAGATAGAAATGGCGATCAGAAGAAGCCTGAATAACAGAGgacaAACCAGCCAAGGAGAAACTGAGCCGCCCGCTGAGGAGGAGCCTGCAGAAGATCATACTGCCGATGATGCATCCGAATATACAGAGTCTTATGTCGCAGGACTGACGGAGGAAAAGCAGATAGAAATGTTGATCAGAAGAAGTCTGAATGACAGAGTACGCAGCAGGCGGAGAGAAACGGGACACCccgtggaggaggaggtgagtcCCGAGGAGCTCAGGTCGAGGAGATTGAAGAGGTTTAAAGAAGACGTTTCCAACCCGGGGAGGGGCAGGAGAAGAAGATTATAATGACAGAAAGAGAATTTCACAATATCTTTTTATCATCGGTTTCTTAGTAGTCTCGCATAGCCAGAACCTTCCTCCACAGGGCTGCGGAGGAAggttctggctagtccacacagcatcctGGGACTctgagaaaactccgattggacaggtagtctagctagctgtctgggttcaccctgcagagatctgaggagcagctaaccACAGTCAGAgaaaggtgacggacatctggcgAAATTTCCTGCAGCGCCCGAACAATCCCGGAAACGAACGGTCGTCGATGTAGACTACAGTAGTTCGTTACCTACGGTACATCCCAGCTGTTTGTTGTCAGGCGTTGTGGTGTactgaacattttgaaaacaattCTTGATATTATATCTTTATAatggggtctctaaaaatattgacaatgtgtcaatCCATGATGTGTCAATCCATGATGAtcatgtgatcatcgtggattattaggcctatgtgtaaaactgcaaaaatatcattcatgcatgtcggcgatttgaacctaattcacttcaatgaAGATAACTATACTATAGTATACATACTATATGATATACTATACATGCtgttcttgttatgagcatcaaagCGTGGCGGCGCTGCGCTGCAAATTCAACTCCTGTTTAGTAcgtgttaactcaaagattcctAGAAAAAAtctaaacgttggaggccattaatcggcgagcaaagtccttgaaatccattctgcagttagcatcatatagccatggcaaaaagaaaaccgtttaattaattttggttttactaagaaactgtgtagcgatgacgttaatagcacgaccgaTTCACCTGCTGAAAGCCCTGTtagttagcacacctcccaccggggggtgacaacgcaagaagaagctgaagaaataacatcctctctggctgaagatgatcctccttacccctctcgctcctctctctcccgttaaattggaacggCCAGCAGTGGAGGGACTGGAAGAGCTGatatatacatggctgtttgttaaggaaggaagcttggggtgcgtcgctaaggtctaattgaacggaggaattatggtattcttcggtag

Function

GO: NA

KEGG:

id description
K09651 RHBDD1; rhomboid domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22334 lncRNA downstream 133285 11844936 ~ 11853130 (-) True G16402
TU22298 lncRNA downstream 174039 11809923 ~ 11812376 (-) True G16383
TU22295 lncRNA downstream 266173 11710848 ~ 11720242 (-) True G16380
TU22291 lncRNA downstream 290435 11694266 ~ 11695980 (-) True G16377
TU22274 lncRNA downstream 374400 11611538 ~ 11612015 (-) True G16366
XR_005637750.1 lncRNA upstream 33593 12040024 ~ 12067403 (-) True LOC120550567
TU22385 lncRNA upstream 108635 12115066 ~ 12227675 (-) False G16435
TU22416 lncRNA upstream 138619 12145050 ~ 12156278 (-) True G16451
XR_005637747.1 lncRNA upstream 145943 12152374 ~ 12153862 (-) True LOC120550557
TU22417 lncRNA upstream 145944 12152375 ~ 12153736 (-) False LOC120550557
XM_039787159.1 mRNA downstream 80126 11887489 ~ 11906289 (-) False dcun1d5
XM_039787155.1 mRNA downstream 80126 11887489 ~ 11906289 (-) False dcun1d5
XM_039787156.1 mRNA downstream 80303 11887489 ~ 11906112 (-) True dcun1d5
XM_039787145.1 mRNA downstream 120481 11813279 ~ 11865934 (-) True capn5a
XM_039787149.1 mRNA downstream 193214 11699899 ~ 11793201 (-) False pak1
XM_039787143.1 mRNA upstream 71775 12078206 ~ 12099187 (-) True ints4
XM_039787146.1 mRNA upstream 99838 12106269 ~ 12114449 (-) True LOC120550222
XM_039787161.1 mRNA upstream 191672 12198103 ~ 12199664 (-) False LOC120550388
XM_039787160.1 mRNA upstream 191672 12198103 ~ 12199660 (-) True LOC120550388
XM_039782925.1 mRNA upstream 282226 12288657 ~ 12386040 (-) False myo7aa
TU22339 other downstream 30837 11949337 ~ 11955578 (-) True G16407
TU21879 other downstream 1561645 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 1655568 10326253 ~ 10330847 (-) False LOC120574316
TU21762 other downstream 1836844 10140176 ~ 10149571 (-) True G16064
TU21765 other downstream 1848068 10136688 ~ 10138347 (-) True G16066
TU22426 other upstream 218628 12225059 ~ 12262775 (-) False G16458
XR_005638366.1 other upstream 480586 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 482442 12488873 ~ 12489063 (-) True LOC120554526
XR_005638489.1 other upstream 483419 12489850 ~ 12490013 (-) True LOC120554512
XR_005638506.1 other upstream 493552 12499983 ~ 12500146 (-) True LOC120554552

Expression Profile