RNA id: XM_039787317.1


Basic Information

Item Value
RNA id XM_039787317.1
length 1809
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120550666
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10359389 ~ 10376811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGGCTCAACTGGTTTTTTTGGACTCTAGAAGTGGGTGTGCCCTCGtgcctatctctctctctctctccctctctcgccCGCTCCCTGtcagtctctcctctctcttcagcTGAACACAAGTGTCAACGGACGGCAAAATGCATTTGGCAAATTCTTTTATCAAAGGCCTGGTTAATGTTGTGAGCAACATCGACCCGGCTCAGTTTAAGCCTTCAGCCCCACCCCCGCCCCGCAGACCTTTGAACTTCGCCGAGTCTCACGACACCGAAGAGGACAAACAGTTTCGTAGAGTTTTCCAACAGCTGGCTGGAGATgaCATGGAGGTGAGTGCCGCTGAGCTGATGAGCATCCTCAACAGAATCATCAGCAAACGTGAAGACCTGAAGACGGACGGTTTCAGCATCGAGTCCTGCAAGAGCATGGTCGCTGTCATGGACAGCGACAGCACAGGTAAACTGGGCTTCGACGAGTTCAAATACATGTGGAACAACATCAAGAGATGGCAGGCTGTGTATATGAAATTTGATGCTGATAGGTCAGGAACGATCTCCTCTGACGAACTGCCAAAAGCCTTCCAAGCTGCAGgttTCCCTCTGAACGACGACCTCTTCAAGCTGATCATCCGTCGCTACACCAACGAGAGCGGCACCATGGACTTTGACAACTACATCGGCTGCCTGGTGCGACTGGACGCCATGTGCAgaGCCTTTAAAACTCTGGATAAAGACAACAGTGGCACCATCGACCTGGACATCAAGGAGTGGCTGCAGCTGACCATGTATTCATGAGGCGGAGACGGGAAGCTACTCTGCTCTTCTTTCATCTcatccctttctccctctcattacATGTGTGCAAGGGCGTAGGTTTAGTTTCAACAATGGGGGTggtgtgggggtgggtgggaCACATTATTAACCCGGGGTCTCTGGGGGTTTGTGCCCCAGAAAAGTTTGAGAGTCAaaaaacttaatttcctgcactCAGAAATGAATCCGTAAAATATTCTAGCAGCTTATAATTTATGGTCCAATTACATATTTGgattatcacaaaaaaaacatagcatttcaacattttactgcacaatacatacttttactttaagtactTCAATCAATTTTGCTAAAAAAACAGAGGTGAAAAggtttctacttaagtaaaagtactattactttgaggaacttttactgaagtacGAGTTAAATTACCGGTAAATTGACTTTACAGCAAAGTACTCAGATTTTGCaatgataaaaaatataaaaataaactgacattttgtgtgtagctccagtaaaaatacagaacattttgtgttatattaaatTCTCTCATACAACGCTGCTCGGTCAGTAAACTTACAAAAATAATTGTCCAAAGAaccccagaaaaaaaaattgaccaCGTGGACTTAATCTCCCAAAAACCAATCATATATTTTGAAggggacaaatctacctcttctaaatattggggggaggggagggacatGTCCCCTGCCTTCCCCCCACCCTAATCTACGCCTATGCACGTCTTGGTTGTCTCTAAAGTAACAGGGAGCAAAATGTCGGCGCAGAGCTAAAGTCAAAGATAAAGAAAAATCTAACTGGGACCAAAGATGTTGCCGTTGCACTGTCCTGTCCTGCTGCTGCCAGGCGGTGGCGCTATTACATTCCCATGTTGTggcaataaagttgaatctaatctaatgttaCAGATTTCtatatttaaatgtgtattGCCAATTTTGAAAAGGTCTTGATTTTTATCCGAAACTGAATAAATTGACAAAACTGACGTTAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08583 CAPNS1, CAPN4; calpain, small subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21744 lncRNA upstream 164179 10188963 ~ 10195210 (+) True G16048
TU21739 lncRNA upstream 173704 10183693 ~ 10185685 (+) True G16044
TU21727 lncRNA upstream 192920 10139003 ~ 10166469 (+) True G16033
TU21725 lncRNA upstream 223658 10135508 ~ 10135731 (+) True G16031
TU21314 lncRNA upstream 354660 10004511 ~ 10004729 (+) True G15727
TU21806 lncRNA downstream 10861 10387672 ~ 10387988 (+) True G16101
TU21809 lncRNA downstream 16609 10393420 ~ 10393970 (+) True G16103
TU21811 lncRNA downstream 21310 10398121 ~ 10471329 (+) False zgc:101731
TU21813 lncRNA downstream 92966 10469777 ~ 10505338 (+) False zgc:101731
TU21826 lncRNA downstream 124720 10501531 ~ 10553760 (+) False G16115
XM_039779289.1 mRNA upstream 239550 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA upstream 239550 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039788424.1 mRNA upstream 382887 9953552 ~ 9976502 (+) True LOC120551195
XM_039780891.1 mRNA upstream 561663 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 561663 9750631 ~ 9797726 (+) False clip3
XM_039784386.1 mRNA downstream 11421 10388232 ~ 10401550 (+) True zgc:101731
XM_039785453.1 mRNA downstream 28378 10405189 ~ 10424770 (+) True LOC120548947
XM_039782658.1 mRNA downstream 57674 10434485 ~ 10445489 (+) False LOC120547173
XM_039782652.1 mRNA downstream 57675 10434486 ~ 10445489 (+) True LOC120547173
XM_039782670.1 mRNA downstream 57675 10434486 ~ 10445489 (+) False LOC120547173
TU21270 other upstream 355794 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 393615 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 393615 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 414944 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 474785 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 1179496 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1180641 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1183580 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1185445 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1517693 11894504 ~ 11900873 (+) True G16267

Expression Profile