RNA id: XM_039787484.1


Basic Information

Item Value
RNA id XM_039787484.1
length 3020
RNA type mRNA
GC content 0.62
exon number 17
gene id shkbp1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 818125 ~ 842046 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCTCACTGCCCGACAGCAAGTTGGGATGAAAACAAAAACGGAAACTTGAATTTGTCTCAAAACATGgagtcaaaataaaaataaaaaagtattgttattgttttttttttttgaaggagtAGATAACCCTTCACATGAAGATGTCTAACACGACGAGGAGCGGCGACATCATCCACCTGAACGTCGGGGGGAAGAGGTTCAGCACCTCCCGGCAGACACTGATGTGGGTTCCTGACTCCTTTTTCTCCAGTCTTCTGAGCGGTCGGATCTCAACTCTGAAGGATGAAACTGGAGCTATCTTCATCGACAGGGACCCCTCTCTGTTCGCCACCATCCTCAACTTCCTGCGGACCAAAGAGCTGTACCCGCGCTCCATCAGCGTGCACATGCTCATGCACGAGGCCGAGTTCTACGGCATCACGCCGCTGgTGCGTAAGCTGCAGCTGTGTGACGAGCTGGACCGCTCCTCGTGTGGAAACGTGCTGTTCAACGGCTACCTCCCTCCTCCAGTGTACCCGGCCAAGCGGCGCAACCGTCACAGCGTGGCGGGATCCCAGTTCATGGCGGGCCGAGTGGCGCCGGCAGAGAGAGCGCCGGTCAGACGCAGCAACACCATGCCCCCCAACCTGGGGAACTCGGGGATCCTGGGGGGCCGGGCCAGTACAGAGGAGAGGACGCcaggaggtcagTTGTCCGATACGGGCATGGTCCGGATCATCTGCGGTCATCACAACTGGATAGCTGTGGCCTACGCCCAGTTCGTCGTCTGCTACAGGGTGAAGGAGTCCACTGGGTGGCAGCAGGTCTTCACCTCTCCCCGTCTGGACTGGGTGATCGACCGAGTGGCGCTGAACGCCAAGGTGATGGCCGGCTCGCTGGGAGACAACGACAAGATGGTGGCCGTGGCCTCGGGGACCGAGATCATCCTGTGGGCCATCTGCCCCGACGGCAACGGGAACGAAATCGGTGTCTTCAGTCTGAACGTGCCGGTGGAGGCCCTCTTCTTCGTTGGTAACCAGCTGATCGCCACCAGCCACACTGGGAAAGTCGGCGTTTGGAACGCCGTCACCAAACACTGGCAGAATCAGGACGTGGTTCCCATCAGCAGCTACGACACGGCCGGCTCCTTCCTCATCCTGGGCTGCAACAACGGCTCCATCTACTACATCGatgTGCAGAAGTTTCCTCTGAGGATGAAGGACAACGATCTGCTGGTGACGGAGCTGTACCGAGACCCGACCGAAGACGCCATCACCGCTCTCAGCGTCTACCTAACTCCCAAAACCAGCGACAGCGGGAACTGGATTGAGATCGCATACGGGACCAGCTCCGGGACGGTCCGGGTCATCGTTCAGCACCCGGAGACGGTGGGCTCGGGGCCGCAGCTCTTCCAGACCTTCTCCGTGCACCGCAGCCCCGTCACCAAGATCATGCTGTCGGAGAAACACCTCATCTCAGTTTGTGCCGACAACAACCACGTGCGGACGTGGACGGTGACTCGCTTCAGAGGGATGATCTCCACGCAGCCGGGCTCCACGCCGCTCACCTCCTTCAAGATCCTCAGCCTGGACGACGTGGACGGACACGGGGGCTGCAGCGCCGGGACGGAGatagGTCCGTACGGAGAGCGAGACGACCAGCAGGTGTTCATCCAGAGAGTCGTACCGGACACCGACAAACTCTACGTCAGGCTGTCGTCCAATGGGAAGAGggtGTGTGAGGTGCGTTCGGTGGACGGCACATCCATCACGGCCTTCATGGTCCACGAGTGCGAGGGCTCGAGTCGCATCGGCTCCCGGCCGCGCCGCTACCTGTTCAGCGGCCACGGCAACGGCAGCATCCAGATGTGGGACCTGACCACGGCCATGGAGATCGCCGGCAAGGTCGACATCCGCGCGCTGGGCGGGCCAACCGAGGAggagctgctggagctgctggacCAGTGTGACCTGGCTCTGGCCCGAACGCCTGACAGCACGCCGAgggcctccacctgcagCCTCTACTCTCAGCTCAGCGACGTCTTCAGGACGGAGCGCCACCACCCGGCCGcagcaggaggagcaggaggagcagcaggaggagcagcaggaggagtTCGAGGAGGACCGGGAGCTTCGGGGTCGTCGGCCTCGCTGTACGGCAGCCTCCCGCGCCAGGCTCCGCCCCCTCTGCCTCTCACCAAACCGCTCCGAGACTCGGCCCTGCCCCTCTCCGGGCCGCAGGCGCTCGCCATACCCGCCTACACCCCCCCGAACCCGGCCTCCAGCCCGCGGCCGCCCAGACAGCCAGACCGGGACCAGAACCGGGACCACCGGGACCAGAACCGGGACTGGGCTTCTGTGCGTAGAGGCAGCTTCGTGGAGCGCTGCCAGGAGCTCGCCAAGGGCTCGGAGGCTGCGGCGGGCTCTGGGTCAGAGGGCACCCGGCGCAGCTTGGCGGTGTGCAGCGAGCTGGAGGCCCGGTTCGGCCTCAGGACCCCGACCACCTTCTCGGTGTCGCCCGGCGCACGCCACTCCCCGGCAACGCCTTCATCCCTTTCGTCGTCGTCGTCGCCACTGTCCTCCTCGTCTTCTTCGTCGTCGCACCGCAGGGCCACGCCCACTCCGCCAACAAGCCCCGCCACTACCGCCGCCGTGAGCCCGACCCGGTCCCAGGCGCCCGCCTCCCCTCGCAGCAGCGCCGCGGCGTCTCCCACCGAAGCACCGGCGTCCCCGGTGACCACGGACAGCCCCGCCGCCGACGCCACCGGCCCCCCAATCAGCCCCAAACCGCACATGAACGAGACCAGCTTCTGATTGGCCGCTCAGACTGGACCGCAGAACGTCAGGACACACACGGGGACATTTGGATTGGTGTTTGAGACGAGACAgcgctgctcgattatggaataAAAACCTTAACCATGAttatttttggtcaatattgaaatcaggattatttaacacgattaatCGCTGACTTTTGGACAGATGTTGCGTttgttgaaattaaaaaaactgtcaaatttCCCTTCAA

Function

GO: NA

KEGG:

id description
K21953 SHKBP1; SH3KBP1-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17545 lncRNA upstream 62204 632705 ~ 755921 (+) False G13186
TU17542 lncRNA upstream 62204 654160 ~ 755921 (+) True G13186
TU17543 lncRNA upstream 62204 654366 ~ 755921 (+) False G13186
TU17544 lncRNA upstream 81582 721535 ~ 736543 (+) False G13186
TU17541 lncRNA upstream 90396 721535 ~ 727729 (+) False G13186
TU17666 lncRNA downstream 54152 896198 ~ 898866 (+) False G13262
TU17669 lncRNA downstream 54152 896198 ~ 1281593 (+) False G13262
TU17702 lncRNA downstream 151066 993112 ~ 1035042 (+) False G13284
TU17704 lncRNA downstream 151066 993112 ~ 1035042 (+) True G13284
TU17700 lncRNA downstream 190630 1032676 ~ 1035042 (+) False G13284
XM_039822841.1 mRNA upstream 247629 553166 ~ 570496 (+) True gpr171
XM_039822831.1 mRNA upstream 247629 553167 ~ 570496 (+) False gpr171
XM_039780996.1 mRNA upstream 430739 386373 ~ 387386 (+) True triap1
XM_039791684.1 mRNA upstream 642976 158592 ~ 175149 (+) True LOC120553352
XM_039819667.1 mRNA downstream 143562 985608 ~ 989953 (+) False LOC120570981
XM_039819681.1 mRNA downstream 144083 986129 ~ 990071 (+) False LOC120570981
XM_039819673.1 mRNA downstream 144083 986129 ~ 989953 (+) True LOC120570981
XM_039819687.1 mRNA downstream 144084 986130 ~ 989709 (+) False LOC120570981
XM_039819700.1 mRNA downstream 144085 986131 ~ 989812 (+) False LOC120570981
TU17630 other upstream 52148 765539 ~ 765977 (+) True G13234
unassigned_transcript_81 other upstream 143752 674282 ~ 674373 (+) True trnar-ucu_9
unassigned_transcript_78 other upstream 168394 649640 ~ 649731 (+) True trnar-ucu_6
unassigned_transcript_77 other upstream 169554 648480 ~ 648571 (+) True trnar-ucu_5
unassigned_transcript_76 other upstream 170978 647056 ~ 647147 (+) True trnar-ucu_4
TU17709 other downstream 155820 997866 ~ 998979 (+) True G13286
TU17665 other downstream 340336 1182382 ~ 1281593 (+) True G13262
TU17835 other downstream 709818 1551864 ~ 1559663 (+) True G13390
XR_005641197.1 other downstream 1768826 2610872 ~ 2626293 (+) False LOC120571130
TU18043 other downstream 1884273 2726319 ~ 2738188 (+) True G13555

Expression Profile