RNA id: XM_039787683.1


Basic Information

Item Value
RNA id XM_039787683.1
length 4011
RNA type mRNA
GC content 0.50
exon number 17
gene id aplp2
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47360113 ~ 47469462 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCAGCCGCGCCACACAGTCCACATTTCCACCAGAGAGCCCGACACTCAGACTCCCAGTCTGCCACCGACCTTCTCTGTCTAGCCCGCGTAAACAAAACAAGCGGAGCCCGGACGCGTCCCGCTCTCCTGGCTACATTCTCACATCACTCCCAGGGCATACTCGATTTAGCTCTTTATTCTCCCCCGGACGGACGTCAGCTTCCCACCGCAGAGCTCCCAGGATATAAGTTGTTCCCAGTAGCAGAACCGGAGATCCTGGAAGATGGGTTCCGTCCCGGCCATATCTGTCCTTATTTTGGGCATTGTGGTTCCAGCGCTGGCCGGCTATATTGAGGCACTAGCAGCCAATGCAGGCACAGGGTTTGCCGTGGCCGAGCCACAGGTGGCGATGTTCTGCGGAAAGCTCAACATGCATGTCAACATTCAGACCGGCCGCTGGGAACCCGACCCATCCGGAACCAAGAGCTGCGTAGGAACCAAAGAGGGTGTGCTGCAGTACTGCCAGGAGATGTATCCCGAGCTCCAAATCACAAACGTGGTGGAAGCCAACCAGCCAATCCGTATCGAGAACTGGTgcaagaaggagaagaaggttTGCAAAGGGCATGCCCACATCGTGGTGCCTTACAAATGCTTAGTGGGCGAGTTTGTGAGTGACGTGCTTCTGGTTCCAGAGAAGTGCAAGTTCTTCCACAAGGAGCGTATGGACATGTGCGTCAGCCATCAGCAGTGGCATGGTGTGGCCAAAGAGGCCTGCGCCAAGAGCTCCATGGTGCTGCACAGCTACGGCATGCTGCTGCCCTGCGGCATCGACAAGTTCCACGGCACCGAGTACGTGTGCTGCCCCTCCTCTCGCAGCGAGGAGCCCGCCGCCCCTTCCCTGCCCTCCCAGGAGGACGAcgaagaggaggagatggaggacgAGGAGATTGACGAGACCGAGCTGGAAGACGAGGACGCCGTAGAGGACAGTGAGACACCAGCCGACGAGCAGACCACGCAAAAGGAGGAGCCGGTGCAGGGGGAGGAAGACGAGGATGAGGAAGACGAGGAGGAGTACCACTACGTCTACGAGGACGAGGAGGCGGATAAGGAGGACGAGGACGAGAAGAAAGAGATCAGCAAAATGTCCGAGAGCCAGGACGAGGACAAGACTCTGCAGGAAGTGAAAGCCGTCCCCCCGACCCCCCAGCCCACCGATGATGTGGACATCTACTTTGAGACCCCGGCCGACGACAAGGAGCACAGTCGCTTCCAGAGGGCCAAGGAGCAGCTGGAGATCAGGCACCGCAACCGCATGGAGAGGGTAAGGAAAGAGTGGGAAGAGGCTGATCGCCAGGCGAAGAACCTGCCCAAGGCCGAGAGGCAGACATTGATCCAGCACTTCCAAGCCATGGTGGAGTCCCTGGAGGAGGAGGCAGCCAGCGAGAAGCAGCAGCTGGTGGAGACTCACCTGGCCCGGGTGGAGGCCATGCTGAATGACCGGCGCCGTCTGGCCCTGGAGAACTACCTGGCTGCCCTGCAGGCCGACCCCCCCAGGCCCCACCGCATCCTGCAAGCTCTGAGACGGTACGTCCGCGCCGAGAACAAGGACCGCCAGCACACCATCCGCCACTACCAGCACGTCCTGGCTGTGGATCCTGAGAAGGCTGCTCAGATGAAGTCACAGGTGATGACCCACCTGCGTGTGATCGACGAGAGGATGAACCAGAGTCTATCTCTGCTCTACAAAGTACCTTATGTGGCCGAGGAGATTCAGGATGAAATTGATGAGTTGCTCCAGGAGCAGAAAGCTGACATGGACCAGTTCCTGTCGTCTATCTCAGAGTCCCAGCCAGACGTCACCGTGTCGTCGTCAGAGGAGGAGAGCGTGGAAGTTCCCGTGTCTGATGGCAAACCCTACCGGCCCTTCCAGGTCACATCCTTGGGGTCCCGTTCAGAGCCAGAGGGCGATCTATCAGACTCCCCACGTGCCTTCAAGAAAGGCTCCGCCATGGCTGGTCTAGACGGTCTGATAGGTGCTGAGGAGAGAATCATCAACAGCAAGCCCAAGATCAGCGACAGCGTGGTGATTGATGAGTCTCTGGATGTTAAAGAGATGGTTTACAGTGCAGAGAGAGTCAGCGTATTGCATGATGCTGAGCTGGAGTCCTACCGCCCCCTGGGAGAGGACTTCAGCTTTGGGAGCAGTGCACTGATTGGCCTGCTGGTGATCGCGGTGGCCATAGCAACTGTTATTGTGATCAGCCTGGTGCTTTTGAGGAAGAGGCAATACGGCACCATCAGTCATGGCATCGTGGAGGTTGACCCCATGCTGACACCAGAGGAACGTCACCTCAGCAAGATGCAGAACCACGGCTACGAAAACCCCACCTACAAATACCTGGAGCAGATGCAGATCTAAACCAGAGCCTGTAGGAGTGGGGGGGGCTCTGTGGAGTCTGACAGAGGACGGCAACCTGAGGGGGGGAACATACTACTGACCAATAACATATGCTATTGTTAAAATCATTTGCATACATCCAAACTCCATTTACTGGTTTGTTCGAAAAAAATCCTTAAATAATGCTACTActtctactactgctactattGTATTATAGAACTCTTTTTTGATCATGTTTCTTTTGAAAAGGTGATGTATCTGCCATATTGCATTATGGAAATTAATGTGATTCTGCAGATTTCTCTGTAATTATTGATACAGCTATCTCAGATCAAGATGTATAACATTTCTTCAGACGTTTTCTTTGATTTTGAAAGTGAAaggcaaatcaagcaaaaatgtaaatgtttttgagTGGCCATCATCAAACCGTCATACCAAACACTACACTTTGATTTTTCCATCATGCAAGGTGTCATCCACGCAGTTTCTGatggtttttcttttgttcttttttttttcttcctctcaatAGATTGCTTGTATATGAAGGCTCTTTGTACCAATTAAAATGTACAGTGATACAACAaatgagaacaaaaaaaattgaaatcatgaattatttagtttctgttctTTGTTTATGATAACAGAcgaaatatacatatacagtttaaatatatatatatatataagaatagATGTTTGTATTCcacctttttttccccaggGGAAGAGGTTACGAGTCGGTTTAGGGTTCTTAGCTTAGCGGTCATGAGTTGTGTTTGCCAGGCACACTGTTGGAAAGAGTCGGGGAAAGGGGAAGGTGTGCACAGACCCCCCAGCTCAAACACATCATGCAAGAACTACTCTGAACCCCTTACCAAGTGAATGTGATAACAAATCCCCctcctacacacaaacacaaccttTTATCAATATGAAAGCAGTATAATTCAAtagatgatgaaaaaaaaaaatacttattgACATGTGTTACATAGTTGGATGTATCagggaagcttttttttttctccatactATGTATCTGACAGGGTCCTATGTGGCTTTGATTTGAATCCACACAAACATTGTGACAGCGGGCAATGACATGCTACAAACTGACAAAcaagtggtgttttttttcagtttggtttgttcattGTTTTTTGCACAAATTATCTGAAGCAAAAACTACTTTGAAACAAACTTTTGGGGGATGATGTACACACATGTCATTGGAGCAACTGTTTGGCTTTCCTGGTCATAAAGCGTAGAACAGTCTGATAGCGCAAAACAGGGCCGACACAGAGgcacaaacacatactgtaaagcAGCTGCCCAAACGAAGTGAAAATGTACGCAATTTGGTGGATTTGGGCATGCTATGACTAATTCTCGGATTACAACAAATGCCAAAACAACGAGTCTGAATATAACCAAATTTAGGGgattattacaaataataacTGTAACAAATTTAGCAATCTGGATTTTGTGATTTGGGTACCGAGAAAGGCTTGGGCCGGCCCTGGATCAAAGCCAATTGAAGACACCTTGGAGCTGGAGGGCTGTGCAGGCAGACAGAGATAGAAAGACAAGGCTTGGAGAGCTGGTTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32992 lncRNA downstream 60948 47295554 ~ 47299165 (-) False dhx34
TU32984 lncRNA downstream 108153 47250386 ~ 47251960 (-) True G24512
TU32979 lncRNA downstream 145877 47213994 ~ 47214236 (-) True G24508
TU32978 lncRNA downstream 146902 47212945 ~ 47213211 (-) True G24507
TU32977 lncRNA downstream 147264 47210623 ~ 47212849 (-) True G24506
TU33002 lncRNA upstream 927 47470389 ~ 47470979 (-) True G24523
TU33033 lncRNA upstream 60572 47530034 ~ 47530348 (-) True G24548
TU33044 lncRNA upstream 96525 47565987 ~ 47566217 (-) True G24557
TU33047 lncRNA upstream 105028 47574490 ~ 47574716 (-) True G24560
TU33082 lncRNA upstream 194292 47663754 ~ 47663995 (-) True G24589
XM_039787634.1 mRNA downstream 4714 47326258 ~ 47355399 (-) True st14a
XM_039786248.1 mRNA downstream 34660 47295685 ~ 47325453 (-) True dhx34
XM_039786428.1 mRNA downstream 84163 47234553 ~ 47275950 (-) False LOC120549478
XM_039786438.1 mRNA downstream 89479 47234553 ~ 47270634 (-) True LOC120549478
XM_039786448.1 mRNA downstream 89479 47240514 ~ 47270634 (-) False LOC120549478
XM_039826284.1 mRNA upstream 292003 47761465 ~ 47766270 (-) True LOC120575471
XM_039789544.1 mRNA upstream 345077 47814539 ~ 47825418 (-) True LOC120551946
XM_039818720.1 mRNA upstream 692214 48161676 ~ 48398619 (-) False nectin1b
XM_039818736.1 mRNA upstream 692214 48161676 ~ 48398618 (-) False nectin1b
XM_039818754.1 mRNA upstream 692664 48162126 ~ 48398620 (-) False nectin1b
TU32961 other downstream 217564 47134857 ~ 47142549 (-) False bet1l
unassigned_transcript_136 other downstream 2433657 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 2433954 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 2434555 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 2434853 44925188 ~ 44925260 (-) True trnar-acg_8

Expression Profile