RNA id: XM_039787962.1


Basic Information

Item Value
RNA id XM_039787962.1
length 5499
RNA type mRNA
GC content 0.45
exon number 20
gene id gucy2f
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21720989 ~ 21732143 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGTAACACTTACGTTTTGGCCCCAGGTCACTTTGGAGGGATTTGATTGAATGTGCCTGTAGCGGACACTGGCATCCTAtattaatacattaaacacTCTTCCAATTTTAAATATCACATTTTTGGCGAAGGGTGctcattgttgcagcagattttattttgaattttaaatatgtgatctattttgtttttttgaagatACATAAGGAAGAAAGGAACCCCAGGGGCAGAGGGGATGTTTTTTGTCCTTCTTCAGATATGCTTCCTGTGAACAGAAGTGTTTGTGGAAAACGCACAGGAGCCTTCAGAGGCGCTCACTGCGGGACCCCATAATCCGAACACAATGACTTGGCTGTGTCTTCACCGGCGCGACACCGTGGATCCTCGGGTGTCTAAGTAAGGTTTTGGGATGGTTAGGTGACGGTTTATGTGGATACAGAAAAGGAGATCTGAGAGGACACCTGTAAGATTGTCTCGTCGGACCCTAAAGCTGTCCTAATGGCTCCAAATAAATGGTGTCACTGGTCTAATTGATAATGCATTAGTGAACACAAATATTCACTATCTTTGACACCCTGGAAGGACAATGCAACATATTCATCCAAATTTCAGAGGGGCGCTATGGGAGTCTAACCATCCATGTATGCCAATAATTAAAAGCAGACCAACTTTAACGACACTGCCCCTTTATAACTTTCTGTTATGGGTCCTCCTCGGAGTGTTGACGTTCCCTTGTTGTGTCCACTGTTTAATATTCAAAGTGGGGGTTCTGGGGCCTTGGAATTGCAACCCTGTACCCTACAGGGCCCTACCTGCTGCGGCCGCCAGGCTCGCTGTAAACAGGATAAACGGAGACCTAAATCTGGATCTGGGACTGAAAATGGACTTTATCATCCTCCAGGAGCCTTGCGAAACATCCAGAGCCCTCACTGCGTTTATTTACTATGAGCAGATGGCGGATGCGTTCGTGGGCCCATCCAACCCGGGATATTGTACTGCAGCTTCTCTGCTGGCCAAGAATTGGGACAAAGCCATCTTCTCTTACAGCTGTGTTAACTATGAGCTGGACCAGCTCATAGAATACCCGACTTTTGCCAGGACAGTGGCAGTTCCCACAGAGGTGTTGTTCACCGTGTTTAAACACTTTAGGTGGGCCAGTATTGTAGTGGTCTCATCCAATGAGGACATTTGGAGGGATACTGCTGTGAGAGTTGCTACTGCTCTCAGAGAGAAGGGGCTTCCTGTTGGCCTGGTTACATCTATTGGTATAAATGAGACGGAGGTGGAGAGCACCCTGAGGAAGATACAGGCTGCAGGAAACATCCATGTCATCATCATGTGCATGCACTCAATCCTGGTTGGAGGGGAGAAGCAGGCCACTTTTCTTCTCAAAGCACAGAAAATGGGCCTGACTTCGGGGAACTATGTGTTCGTGCCCTATGACACCCTCCACTACAGCGTGCCCTACACCAATGTCTCCTACTTCCCGCTGCAAAACAACAGCAGGCTGAGGGAGGCCTATGATGCTGTGCTCACTATCACTATGGCCTCTGAGCCTTTGTCGTTCAACGAGGCGTTCGCTGCCGCCCAGAGGAGTGAGGAAATGACGCTAGACGTGCAGCCAGAACAGGTTAACCCACTATTTGGGACCATCTATGACAGCATCTACCTGCTGGCTAAGTCTATCCACAATGCCAGGAGAGGAGGCATGCCGCTGTCAGGCTCAAACCTAGCGTACTTCACAAAGAATACAACCTTCACTGGCTTCAACCACAAGGTCAAGGTGGACACTAGTGGGAATGTTAAGACCAATTACATCATCCTGGACTCTGACAACAGGGGGAGCCAGCTGTACCAGACCCATTTAGTGGATCTAATGTCCGGAGTGCTTAGTTTTGCTGGGAGGTCCATTAATTTTCCAGGAGGATCTCCTCCACCGTCTGATTCCAGCTGCTGGTTTGACAAGAATGCCATCTGCACCGGAGGTGTGGAGGTCACCTACATCATAGTGGTGTTTGCTGTCATCTTCATTCTGGCTATAGGAGGGCTCGTTATAAGTCTTTGTATCAGGAGGAGACTCCAACAAATCCAGCTGGTCAAAGGTCCCAATCGAATCCTCCTGACTTTAGAGGATCTCACTTTTATCAATCCTCAGCTTAGCAAAAAGAAAATTACTTTAGAAGATTTCAGTGAATCCAAGAGCGCACTAGAGGAGAAATCTGCAAACGGCTCGCACTCTGTGAACAGCATGCAGGCTGCAACTCATGAGACCACCAATGTAGCTGTGTACGAGGGTGACTGGGTGTGGTTAAAGAAATTTGAGGAGGGACAGTTCAAAGAAGTGAAGCAGAGCACCACCAAGATTTTCACAAAGATGAAAGACCTGAGAAACGAGAACGTGAACCCGTTTCTTGGCTTCTTTTTGGACTGCTCCATGTTTGCGGTGGTGATGGAGCACTGCTCACGGGGCAGTCTACAAGACCTGCTGAGGAACGAGGACGTCAAATTAGACTGGATGTTCAAGTCCTCACTTGTGCTCGACCTCATCAAGGGTATGAAATACCTTCACCACAGAGAATTCCCCCACGGCAGACTAAAATCTTGTAACTGTGTGGTAGACGGGCGTTTTGTCCTCAAGATAACTGACTATGGCTTCAATGAGCTGCTGGAGTCTCAGAAAGCGCCTACAGAAGAACCTCCACCTGAAGATTTATTTTGGACAGCTCCAGAGTTCTTAAGGGACCTTGCGAACTCACGTAAAGGCACCTACAAGGGAGACGTGTACAGCTTTGCCATCATTCTTCAAGAGGTAGTGGTCAGAGGGCCACCCTACTGCATGCTGGGTCTACCGCCCAAGGATATCATCCGTAAGGTGAAGAAGCCTCCTCCGATGTGCCGCCCCAATGTGGCCCCGGACCAGGCTCCTCTGGAGTGTATCCAGCTGATGAAACAGTGCTGGTGCGAAATGCCTGAACGCAGACCAACATTTGAAGAAATCTTTGACAGGTTTAAGATAATCAACAAGGGTAAGAAGACTAACATCATTGACTCCATGCTGAGGATGCTGGAGCAGTACAGCTCCAACCTGGAGGACCTCatcagagagagaacagaggagCTGGAGTTGGAAAAACAGAGAACAGAAAAACTATTGTCAGAGATGCTACCACCTTCTGTAGCTGAGGCCCTGAAGACCGGTGCCACAGTGCAGCCAGAGTACTTTGACCAGGTGACAATCTACTTCAGTGACATTGTAGGTTTCACTACCATCTCCTCGCTCAGTGATCCCATCGAGGTGGTCGACCTTCTCAATGACCTCTACTCTCTGTTTGACGCCGTGCTCAGTAACCACGATGTGTACAAGGTGGAGACCATTGGTGATGCTTACATGGTGGCATCGGGTCTGCCAAAGAGAAACGGCAACAAGCACGCGGCTGAGATCGCCAACATGTCTCTGAACATTCTCAGCTCAGTAGGAACCTTCCATATGCGGCACATGCCAGACGTGCCCGTCAGGATACGCATAGGAATCCACTCAGGGCCCTGTGTTGCTGGGGTGGTAGGTCTGACTATGCCTCGGTACTGCCTTTTTGGAGACACAGTCAACACTGCCTCTCGTATGGAATCCACTGGGCTGCCTTATAGAATCCACGTAAATATGAGCACTGTGAAGATCCTCCATTCTCTTAATGAGGGTTATAAAATAGATGTCAGAGGCAAGACAGAGCTGAAGggtaAAGGTATTGAAGAGACATACTGGCTTGTAGGGAAAACAAACTTTACAAAGCCTTTGCCAAAACCGCCAGAGATCAAACCAGGGGACAACTGGCAGGAGATGGTGACAGAAGAGATCAAGACGCTTTTTCGCAAGGCCAACAGGCAGGTGGACAAGAAGATCTGaatgagaggaagagaaggaaagatGTGAAAGGAACAATaccagagaagaaaagaggaggacACATccagaggaagacagagagcaCCACCCAGCTTCTCACTTTGGCTTAATGCAGACTTGTTTAAGAGGATTGCCCATCGACTGGCTAATCTGCCTGCAGCCAGCGCAGCAGTACACCACGGTGCTAATGTAATGAGAGTTGTCGCATTACCTGCCTACATACCTGCTGCCAGCAGCGCAGGGAAGGTGAACAGCGCCTCAATAAAGGAGGCACTCACCGGCCACTACGTGGTCACCTATTTCAAGGCAACCAGAGGTTCACCCATCGGAAGATTCAAAGCCCCAAATGCCTAtttcaaaattattattatttatttttttctggtgaTGATGTCTGTTTTTAGTTTGCCATGAAAGCTCATGATAGAGTTGAGAGTAAGGATGTTACTTAGCTATGGCTGAATATTATATGTCATTAGCCCTCTGAAGTCAGAGTGTGTATAATtatcaaaagagagaaagagacatttGCCACTTTAATTTCTACTGTAGAATGACTAGGAAGAGTCTGTCAGGTCCACCCGTTTgccacaaaacatttttttgagaTGTCACCTTTTCTTCTTACTAATGAAAGGGTGGCAGCACTTGGAAAGTCAATacaatgcaacaaaaaatatatttccttTCCTGTTATAGTCAATAAAGTTTTAAAGTCCTTTAGTGAAACGTATTGCTGTTTCCGAAGTGCTCAGTGATGCATTAATTCCACTATTCATCATGAAAACTATTTGTGAGGCAATCTTTtctacatttcagcattttaaaATCGTGTTTCTTTTCCATCATCACAAATTTACAACCTGTCTTTAGCGTGGCAATATGAGAACACAATCTCTGCATTGATCCTCACACAGAAATTGCATTTATTTCACAAACCAATTAACTTTGTGATGTCAAAGTACACAAATCCATAAAAGTTTATTTCTGAGATCAGGAGAGCAAACTGTGTGTACAATGTTAAACTCATCTGGTAATGTTAAAGTTGGTTTCCCCAACAGATGACATTGCACTATACtaaccaacaagtcctccatgCATGATGCATCTGAGAGCTGTGCAGCCGCTGAAGAGCCCCATCCAGTGttcaaatatattatatattatattttctgAGGAGCGTTGAATGAATTTTATTTATCAACAGAGTAAAAAATAATAAGCAACATGTTCACTGCAATTACTTTAAAATAAAGCATGTAGGCATTAGGAAATACCTGAGGGCACACACTAAATATAATATCAAACTAAATAGATAATAATATTGAAATATGTTATGTGATAGAAATGTATTTGTGAAAGTATTGTTTTGACCTAAACCCAAAATATGACATCTCCAATCCCCTGCATCTTATCATCTGAATGGTGACTATAGGAGCATCTTAATTCATGTGTGCAAAACAACAGCAGAGTCAGTTTGAAACAtgtatattttgttctgtatatATGTTCTATATTATTGCTGCAATGCAAAGTATAAGGTGTATGTAAATATGGCATAATTAAGtaattaaataatgaatttgTAACACCTTCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007601 visual perception biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25483 lncRNA downstream 25267 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA downstream 68123 21651703 ~ 21652866 (-) True G18631
TU25448 lncRNA downstream 108739 21611137 ~ 21612250 (-) False LOC120572205
TU25431 lncRNA downstream 137586 21527455 ~ 21583403 (-) True G18591
TU25545 lncRNA upstream 87846 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 415896 22148039 ~ 22148297 (-) True G18758
TU25667 lncRNA upstream 456120 22188263 ~ 22188687 (-) True G18770
TU25698 lncRNA upstream 550860 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 632128 22364271 ~ 22364495 (-) True G18803
XM_039788843.1 mRNA downstream 10626 21664076 ~ 21710363 (-) True gdpd5b
XM_039821426.1 mRNA downstream 105743 21610814 ~ 21615246 (-) False LOC120572205
XM_039825479.1 mRNA upstream 22250 21754393 ~ 21758179 (-) True mmp13b
XM_039790075.1 mRNA upstream 55397 21787540 ~ 21794580 (-) True siae
XM_039790066.1 mRNA upstream 55803 21787946 ~ 21794944 (-) False siae
XM_039788856.1 mRNA upstream 251159 21983302 ~ 22007175 (-) True LOC120551419
XM_039777878.1 mRNA upstream 312038 22044181 ~ 22053600 (-) True srpra
TU25499 other downstream 49510 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 459066 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 623788 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1579477 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1910859 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25608 other upstream 269761 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1407070 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1407257 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1514460 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1997345 23729488 ~ 23758826 (-) False atm

Expression Profile