RNA id: XM_039788026.1


Basic Information

Item Value
RNA id XM_039788026.1
length 2558
RNA type mRNA
GC content 0.51
exon number 14
gene id p4ha3
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 37732841 ~ 37746282 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAATATAACCTCTCATTGTCTCAATAAGCATGCAGCGCTGATCATACAGGGTTTATGATTGACTGTGGGACTGGGTTGCAGCAGGCTGCAGGTCAGTCCCACACAGAAGGAAAAAGCTGATGTCAGAGCAGATGAGGGTGACCCCCGTGAGGAATTTAGAGGCACTCTTGTAAATCCTGAGGATCGTCAGTACAGTTCAGGACAGTGCGAGAGGAGCCCACTCACTGAAGCTACTCCACAAGAGAAGCAATACGTTTATTATCAGCGCAGGAGATGAAGTATCCCACATGGGTTTGCTTCAGCTGGAGTCTCCTGACTGTAGCTGTGATTCCCGTGTCTTTGGGGGAAATGTACACGTCGCTGCTGAACGTCAAGCAGGCGATCAGTGTTGAACGGAAGCTGATCGATTACTTGAGAATTTATATCGACCACGAGTTTGAGAGACTGGAGGACATCAAGCGCTTTTATGCCAAAGTGTCAGACCTGCACACTGAACTTTACAAAGGCCCGGCGACAGCGATGGCCAACCCGCTGGTGGCATTCACCCTGATCAAGCGGCTGCATTCCGAGTGGCTGAACGTAGTCTACAGCAACGAAGCCCTGGAGAACACACAAGCCCTCAGGTCCAGttatgaggaggaagaggccgATCTGCCCAAACTGGAAGACCTCCAGGGGGCCGCCAAGGGGCTGATGAGGCTCCAGGATGTGTATGCTCTCCAAGTTGCGAGCCTTGTGAGGGGTTGTTTCCAGAGAGTCACTAAAGGCAAGCCTATTGATATCTACCTGCCTGCAGTGTCTGTCCCGCTGTCTGGTGATGACTGCTTTCTGGTTGGAAAGGTGGCCTACGAGCAGGAGGACTACTACCACTCTGTGCAGTGGTTGGAGGAGTCGGTGCGTCTCTTCAGGGGAACAGGAGGCGAGTGGAGCCCTGAGAATGAAGGGACTTTAGAGGATGCTCTGGATCACCTGGCATTTTCTCACTTCAAAACAGGAAACATTTCCTATGCTCTCAGTCTATCTCAGGAGTTACTGAACCATGATCCAATGAACGGAAGAGTTTTGCAGAATGTTGAGAAATACGAGAAGCTGCTGGGTACGAGTCCACCCATATCAATAAGAGGCGATGGGCTGAGGAGACCCACCTCCAATAATTTAAGGACCAGGGACACTTATGAGAGGCTCTGCCAGACCCAAGGCTCTCAGCAGCCATTGCTTTCTGAAAACCCCAGACTATTCTGTGACTACTTCACCAACGGGAATCCTGGACTGCTACTGCTGCCGGTGAGACGGGAAGTGCTGAGCCTGCGGCCGTATGTGGTCCTGTACCACAGCTTCATCACTGACACAGAGGCTGAGGACATCAAGAGGACCGCCCAGCCAGGATTGAAACGATCAGTGGTGGCAGCTGGAGAGAAACAAGCAACGGCAGACTACCGCATCAGCAAAAGTGCATGGCTGAAGGGATCAGCACACTCCACTGTTGGGAAGCTGGACCAGAGGATCTCCATGCTCACAGGTCTGAATGTGAAGCATCCATATGGCGAGTACCTCCAAGTAGTGAATTATGGGATTGGTGGCCATTATGAGCCTCACTTTGACCATGCTACATCGCCTTCAAGTCCCGTGTTCAAGCTGAAAACTGGGAATCGAGTGGCAACCTTTATGATATATCTCAGCTCTGTCGAGGCAGGTGGGTGCACAGCTTTCATCTACGCCAACTTCAGCGTTCCCGTCATGGAGAAAGCTGCCATTTTCTGGTGGAATCTCCATAGAAATGGTCAAGGAGACGCAGACACACTGCATGCTGGCTGCCCTGTGCTTATAGGGGACAAATGGGTGGCAAACAAATGGATCCATGAGCACGGCCAAGAGTTCCACCATCGCTGCAGCCTGAATCCTGAAGAGTGAGTGAGAGGGGTGGAGCGATAGCTGGGCCCCTTGCAGTACAAGAGCCAGCCTCTACAATTGAGAGGCACACTTGCGGGTGGAGAGAAGAAGGAAGCCAGAAAGTGAGCACACAGGCAGGGGAGGTTAGAGCTGTTATGGGGCAGCCTGCATCTGTGATTGGAGACCCAGGCCGCAGGGAGCCTGAAGCGTACAGTGCTGCAGTGGACATGGATAGCACAAGGCTGAGAGGTGGGGTAGAAGTGGACTGGGGCAGTTGGCAATCAGCCCCCAGAGGCCAAAATGCTCTCTTGCTCTTACTGGCCAGTTCCTGCAGATGAGTGGAGTGAGGCCTCTACCTTCACACACTGTGCTGGTTTCAGTAAACTGTGCAAGGCTGTTTGCCTCTCCTGCTTCCTTAAAAACTGATGCAGCCCTTTTCCTACACTGGGCCCACTCTAGGTTCTGTCTTTAAAAATCAAcacagctgtactttgtgcAGAGTCTAAGAACTTTATTTCCAATGTGTAGATGCATAAGTTTACAAACATACCTAATGTGCCTGAATCACAGTGCAATGTGTAGACATTTCTGTTTGATGTAATGTTGcagccaaaaaataaaatgctgtttttggATTCCATGAAATGCATGGAAGAGCAAGCAGATA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30409 lncRNA downstream 39755 37692580 ~ 37693086 (-) False LOC120571840
TU30405 lncRNA downstream 64897 37667639 ~ 37667944 (-) True G22371
TU30348 lncRNA downstream 166386 37566234 ~ 37566455 (-) True G22321
TU30347 lncRNA downstream 166666 37565863 ~ 37566175 (-) True G22320
TU30338 lncRNA downstream 282001 37450013 ~ 37450840 (-) False tada2a
TU30517 lncRNA upstream 155986 37902256 ~ 37903681 (-) True G22458
TU30523 lncRNA upstream 160092 37906362 ~ 37910118 (-) True G22462
XR_005642040.1 lncRNA upstream 557536 38303806 ~ 38351320 (-) True LOC120575673
TU30607 lncRNA upstream 606112 38352382 ~ 38352586 (-) True G22520
TU30659 lncRNA upstream 981334 38727604 ~ 38728965 (-) False LOC120570635
XM_039783838.1 mRNA downstream 2099 37709784 ~ 37730742 (-) False c2cd3
XM_039783855.1 mRNA downstream 2100 37709785 ~ 37730741 (-) False c2cd3
XM_039783819.1 mRNA downstream 2100 37709785 ~ 37730741 (-) False c2cd3
XM_039783827.1 mRNA downstream 2100 37709785 ~ 37730741 (-) False c2cd3
XM_039783809.1 mRNA downstream 2100 37709785 ~ 37730741 (-) True c2cd3
XM_039789303.1 mRNA upstream 476 37746746 ~ 37747713 (-) True or95a1
XM_039785406.1 mRNA upstream 25277 37771547 ~ 37772536 (-) True LOC120548891
XM_039789319.1 mRNA upstream 29404 37775674 ~ 37776606 (-) True LOC120551756
XM_039789333.1 mRNA upstream 38673 37784943 ~ 37785878 (-) True LOC120551759
XM_039791698.1 mRNA upstream 123262 37869532 ~ 37876155 (-) True rrp8
XR_005636371.1 other downstream 77046 37651459 ~ 37655795 (-) True si:ch211-105f12.2
TU30252 other downstream 463521 37264573 ~ 37269320 (-) True G22245
XR_005641838.1 other downstream 1182727 36460680 ~ 36550114 (-) False dph1
TU29998 other downstream 1402432 36318773 ~ 36330409 (-) False taok1a
unassigned_transcript_104 other downstream 2685892 35046878 ~ 35046949 (-) True trnap-cgg
TU30601 other upstream 606790 38353060 ~ 38363688 (-) False robo2
XR_005641089.1 other upstream 982671 38728941 ~ 38735823 (-) False LOC120570635
TU31014 other upstream 2279612 40025882 ~ 40033156 (-) False LOC120546248
unassigned_transcript_105 other upstream 3285536 41031806 ~ 41031878 (-) True trnak-uuu_7
XR_005641814.1 other upstream 5490412 43236682 ~ 43346673 (-) True LOC120574039

Expression Profile