RNA id: XR_005637812.1


Basic Information

Item Value
RNA id XR_005637812.1
length 795
RNA type transcript
GC content 0.49
exon number 6
gene id mrps23
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44816628 ~ 44824993 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAACTGTCGTAAAACACGAAGAAGAAAAAGTGCCGCAAAGCATCTACTCTGCCGGAAATCCTGCAAAGAAGATATGTCTTTTATATTCTAGCAGAAGACTAATGTTACAGTGCTACAAGCTGTCGATGAAAAACACGAATGGCTGGCAGCAGACTAGAGAGGTTTGGAACTGTATTCACCCGGGTTCGAGATCTGATGCGATCCGGGGTCATAAAGCCATCAGAGAAACCCATCTGGTATGATGTTTATGAGGCTTTTCCACCAAAGAGGGACCCACTTCATGTGAAGCCACACACCAGACCCAGTACCAAGAAACAGGAAACTGTGCCTGAAATCTTCTACAGAGAGGATGAAGCTAGAGCGAAGTTCTATGAGCAGTATGGGACGGGTCCTCGGCCTTTTGATCTGTCCAAGTCCAGCTTTGTTTCTACATGTCAGAGGTTTGTAGACAAGTACACAGAGTTGCAGAGCCACAGTGAGCTGGATGGCTCGGCTCTGTTTGAGGAGACCGGTAAGGCTTTACTCTCGGAAGGCATCGTGCTGAGAAGGAGAGGGGCGCCTCTGGGAACAGAAGAGACTGGAGCACACTGATTGATTTGCAGCCTTTTAATTGTGTAAAGAGACGTTTCAACACCTGTCTTCATCAGAGTCAACATGGACAAAGACAAAAgGCGTCAGCGGAGTCCAGGGATCCGGTGCTGGAGCTGAAGCTGACAGAAATGTTGGCGGAGCAGCAGTCACACAGTGCTGACAGCGAGGagacaacacacagcacacacacaccgtagGGCCCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32274 lncRNA downstream 539 44812153 ~ 44816376 (-) True G23911
TU32275 lncRNA downstream 10876 44805798 ~ 44806039 (-) True G23912
TU32268 lncRNA downstream 42476 44774205 ~ 44774439 (-) True G23906
TU32162 lncRNA downstream 590376 44222212 ~ 44226539 (-) True G23811
TU32160 lncRNA downstream 590439 44222212 ~ 44226476 (-) False G23811
XR_005637325.1 lncRNA upstream 41137 44866130 ~ 44880509 (-) True LOC120549067
XR_005637324.1 lncRNA upstream 55677 44880670 ~ 44884338 (-) True LOC120549064
TU32317 lncRNA upstream 140746 44965739 ~ 44965970 (-) True G23949
TU32333 lncRNA upstream 173984 44998977 ~ 44999217 (-) True G23964
TU32347 lncRNA upstream 178441 45003434 ~ 45005501 (-) True G23977
XM_039789460.1 mRNA downstream 77482 44737861 ~ 44739433 (-) True LOC120551889
XM_039824994.1 mRNA downstream 702844 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA downstream 702844 44098963 ~ 44114071 (-) True LOC120574575
XM_039824969.1 mRNA downstream 718442 44094848 ~ 44098473 (-) True LOC120574562
XM_039824982.1 mRNA downstream 729664 44083085 ~ 44087251 (-) True omgb
XM_039777980.1 mRNA upstream 143205 44968198 ~ 44986626 (-) True phf12b
XM_039778005.1 mRNA upstream 162970 44987963 ~ 45315867 (-) False sez6b
XM_039777999.1 mRNA upstream 182160 45007153 ~ 45315867 (-) False sez6b
XM_039777990.1 mRNA upstream 182160 45007153 ~ 45315867 (-) True sez6b
XM_039791360.1 mRNA upstream 670544 45495537 ~ 45628896 (-) False myo18ab
XR_005638163.1 other downstream 1100174 43701232 ~ 43716741 (-) True LOC120553425
TU32041 other downstream 1115618 43700971 ~ 43701297 (-) False LOC120553425
unassigned_transcript_121 other downstream 1277802 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 1278743 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 1279333 43537511 ~ 43537582 (-) True trnaa-ugc_4
unassigned_transcript_122 other upstream 85834 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 86863 44911856 ~ 44911928 (-) True trnar-acg_1
unassigned_transcript_124 other upstream 87162 44912155 ~ 44912226 (-) True trnah-gug_1
unassigned_transcript_125 other upstream 88198 44913191 ~ 44913263 (-) True trnar-acg_2
unassigned_transcript_126 other upstream 89518 44914511 ~ 44914583 (-) True trnar-acg_3

Expression Profile